Claudio Isella
| Snapshot Date: 2020-01-15 16:46:30 -0500 (Wed, 15 Jan 2020) |
| URL: https://git.bioconductor.org/packages/Mulcom |
| Branch: master |
| Last Commit: 1b689ea |
| Last Changed Date: 2019-10-29 13:35:18 -0500 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-01-16 13:32:49 -0500 (Thu, 16 Jan 2020).
| Package 1107/1818 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| Mulcom 1.37.0 Claudio Isella
| malbec2 | Linux (Ubuntu 18.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ WARNINGS ] | OK | |
| Package: Mulcom |
| Version: 1.37.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:Mulcom.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings Mulcom_1.37.0.tar.gz |
| StartedAt: 2020-01-16 06:49:00 -0500 (Thu, 16 Jan 2020) |
| EndedAt: 2020-01-16 06:50:48 -0500 (Thu, 16 Jan 2020) |
| EllapsedTime: 108.0 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: Mulcom.Rcheck |
| Warnings: 2 |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:Mulcom.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings Mulcom_1.37.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/Mulcom.Rcheck’
* using R Under development (unstable) (2019-12-14 r77572)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Mulcom/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Mulcom’ version ‘1.37.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Mulcom’ can be installed ... WARNING
Found the following significant warnings:
mulLibs.cc:708:17: warning: expression result unused [-Wunused-value]
See ‘/Users/biocbuild/bbs-3.11-bioc/meat/Mulcom.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... WARNING
Files in the 'vignettes' directory but no files in 'inst/doc':
‘Mulcom.Rmd’
Package has no Sweave vignette sources and no VignetteBuilder field.
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
mulInt 7.416 2.929 10.345
mulOpt 6.414 2.262 8.676
* checking PDF version of manual ... OK
* DONE
Status: 2 WARNINGs, 1 NOTE
See
‘/Users/biocbuild/bbs-3.11-bioc/meat/Mulcom.Rcheck/00check.log’
for details.
Mulcom.Rcheck/00install.out
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL Mulcom
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’
* installing *source* package ‘Mulcom’ ...
** using staged installation
** libs
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c mulLibs.cc -o mulLibs.o
mulLibs.cc:708:17: warning: expression result unused [-Wunused-value]
current_cluster ;
^~~~~~~~~~~~~~~
1 warning generated.
clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o Mulcom.so mulLibs.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-Mulcom/00new/Mulcom/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Mulcom)
Mulcom.Rcheck/Mulcom-Ex.timings
| name | user | system | elapsed | |
| MULCOM-class | 0.427 | 0.049 | 0.477 | |
| MULCOM_P | 0.337 | 0.040 | 0.377 | |
| mulCAND | 1.637 | 0.101 | 1.739 | |
| mulCalc | 0.391 | 0.028 | 0.419 | |
| mulDELTA | 0.274 | 0.014 | 0.289 | |
| mulDiff | 1.568 | 0.074 | 1.641 | |
| mulFSG | 1.627 | 0.077 | 1.704 | |
| mulIndex | 0.282 | 0.016 | 0.299 | |
| mulInt | 7.416 | 2.929 | 10.345 | |
| mulOpt | 6.414 | 2.262 | 8.676 | |
| mulOptPars | 1.379 | 0.046 | 1.426 | |
| mulOptPlot | 2.055 | 0.419 | 2.475 | |
| mulParOpt | 2.074 | 0.340 | 2.416 | |
| mulPerm | 1.215 | 0.055 | 1.270 | |
| mulPermC | 0.304 | 0.022 | 0.326 | |
| mulScores | 0.371 | 0.027 | 0.398 | |