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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/MsCoreUtils_1.0.0.tar.gz && rm -rf MsCoreUtils.buildbin-libdir && mkdir MsCoreUtils.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MsCoreUtils.buildbin-libdir MsCoreUtils_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL MsCoreUtils_1.0.0.zip && rm MsCoreUtils_1.0.0.tar.gz MsCoreUtils_1.0.0.zip
###
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install for i386

* installing *source* package 'MsCoreUtils' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c impNeighbourAvg.c -o impNeighbourAvg.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c localMaxima.c -o localMaxima.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o MsCoreUtils.dll tmp.def impNeighbourAvg.o init.o localMaxima.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/MsCoreUtils.buildbin-libdir/00LOCK-MsCoreUtils/00new/MsCoreUtils/libs/i386
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'MsCoreUtils'
    finding HTML links ... done
    aggregate_by_vector                     html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpshNtHM/R.INSTALLfd85e976e57/MsCoreUtils/man/aggregate_by_vector.Rd:36: file link 'colMeans' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpshNtHM/R.INSTALLfd85e976e57/MsCoreUtils/man/aggregate_by_vector.Rd:38: file link 'colMedians' in package 'matrixStats' does not exist and so has been treated as a topic
    binning                                 html  
    check                                   html  
    coerce                                  html  
    dotproduct                              html  
    group                                   html  
    i2index                                 html  
    imputation                              html  
    localMaxima                             html  
    matching                                html  
    medianPolish                            html  
    noise                                   html  
    normalize                               html  
    peakRegionMask                          html  
    ppm                                     html  
    range                                   html  
    rbindFill                               html  
    refineCentroids                         html  
    rla                                     html  
    robustSummary                           html  
    smooth                                  html  
    validation                              html  
    valleys                                 html  
    vapply                                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'MsCoreUtils' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c impNeighbourAvg.c -o impNeighbourAvg.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c localMaxima.c -o localMaxima.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o MsCoreUtils.dll tmp.def impNeighbourAvg.o init.o localMaxima.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/MsCoreUtils.buildbin-libdir/MsCoreUtils/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MsCoreUtils' as MsCoreUtils_1.0.0.zip
* DONE (MsCoreUtils)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'MsCoreUtils' successfully unpacked and MD5 sums checked