| Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:58:52 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE MBQN PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1005/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| MBQN 2.0.3 Ariane Schad
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | [ OK ] | OK |
| Package: MBQN |
| Version: 2.0.3 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:MBQN.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings MBQN_2.0.3.tar.gz |
| StartedAt: 2020-10-17 02:40:44 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 02:44:42 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 237.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: MBQN.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:MBQN.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings MBQN_2.0.3.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/MBQN.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MBQN/DESCRIPTION’ ... OK
* this is package ‘MBQN’ version ‘2.0.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MBQN’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
getPXDfile 0.878 0.21 9.075
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
MBQN.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL MBQN ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘MBQN’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MBQN)
MBQN.Rcheck/MBQN-Ex.timings
| name | user | system | elapsed | |
| getKminmax | 0.001 | 0.001 | 0.002 | |
| getPXDfile | 0.878 | 0.210 | 9.075 | |
| getPvalue | 0.364 | 0.020 | 0.385 | |
| mbqn | 0.008 | 0.001 | 0.010 | |
| mbqnBoxplot | 0.045 | 0.002 | 0.048 | |
| mbqnGetNRIfeatures | 1.002 | 0.059 | 1.078 | |
| mbqnGetThreshold | 0.501 | 0.010 | 0.518 | |
| mbqnLoadFile | 3.114 | 1.201 | 4.466 | |
| mbqnNRI | 0.014 | 0.001 | 0.014 | |
| mbqnPlotAll | 0.038 | 0.002 | 0.040 | |
| mbqnPlotRI | 0.870 | 0.074 | 0.949 | |
| mbqnSimuData | 0.261 | 0.545 | 0.828 | |
| mbqnSimuDistortion | 0.032 | 0.001 | 0.032 | |
| truncateDecimals | 0.000 | 0.000 | 0.001 | |