| Back to Multiple platform build/check report for BioC 3.11 | 
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This page was generated on 2020-10-17 11:56:39 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE GeneRegionScan PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. | 
| Package 689/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| GeneRegionScan 1.44.0 Lasse Folkersen 
 | malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] |  | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |  | 
| Package: GeneRegionScan | 
| Version: 1.44.0 | 
| Command: rm -rf GeneRegionScan.buildbin-libdir && mkdir GeneRegionScan.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneRegionScan.buildbin-libdir GeneRegionScan_1.44.0.tar.gz | 
| StartedAt: 2020-10-17 10:36:36 -0400 (Sat, 17 Oct 2020) | 
| EndedAt: 2020-10-17 10:37:25 -0400 (Sat, 17 Oct 2020) | 
| EllapsedTime: 49.6 seconds | 
| RetCode: 0 | 
| Status: OK | 
| PackageFile: GeneRegionScan_1.44.0.zip | 
| PackageFileSize: 7.658 MiB | 
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### Running command:
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###   rm -rf GeneRegionScan.buildbin-libdir && mkdir GeneRegionScan.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneRegionScan.buildbin-libdir GeneRegionScan_1.44.0.tar.gz
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install for i386
* installing *source* package 'GeneRegionScan' ...
** using staged installation
** R
** data
** exec
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GeneRegionScan'
    finding HTML links ... done
    Nondocumented-objects                   html  
    ProbeLevelSet-class                     html  
    addSnpPdata                             html  
    checkForFileInPath                      html  
    doProbeLinear                           html  
    doProbeTTest                            html  
    exampleProbeLevelSet                    html  
    excludeDoubleMatchingProbes             html  
    exonStructure                           html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp2jeC8P/R.INSTALL1d34572278bf/GeneRegionScan/man/exonStructure.rd:21: file link 'DNAString' in package 'Biostrings' does not exist and so has been treated as a topic
    findProbePositions                      html  
    findSequenceInGenome                    html  
    geneRegionScan                          html  
    genomic                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp2jeC8P/R.INSTALL1d34572278bf/GeneRegionScan/man/genomic.Rd:13: file link 'readDNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
    getLocalMetaprobeIntensities            html  
    getLocalProbeIntensities                html  
    getMetaprobesetsFromRegionOfInterest    html  
    getProbeLevelAnnotationForExonArrays    html  
    getProbesetsFromMetaprobeset            html  
    getProbesetsFromRegionOfInterest        html  
    getSequence                             html  
    getServerProbeIntensities               html  
    mrna                                    html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp2jeC8P/R.INSTALL1d34572278bf/GeneRegionScan/man/mrna.Rd:12: file link 'readDNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
    plotCoexpression                        html  
    plotOnGene                              html  
    plotStatistics                          html  
    readGeneInput                           html  
    translateSampleNames                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'GeneRegionScan' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GeneRegionScan' as GeneRegionScan_1.44.0.zip
* DONE (GeneRegionScan)