| Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:56:39 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE GeneRegionScan PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 689/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| GeneRegionScan 1.44.0 Lasse Folkersen
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
| Package: GeneRegionScan |
| Version: 1.44.0 |
| Command: rm -rf GeneRegionScan.buildbin-libdir && mkdir GeneRegionScan.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneRegionScan.buildbin-libdir GeneRegionScan_1.44.0.tar.gz |
| StartedAt: 2020-10-17 10:36:36 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 10:37:25 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 49.6 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: GeneRegionScan_1.44.0.zip |
| PackageFileSize: 7.658 MiB |
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### Running command:
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### rm -rf GeneRegionScan.buildbin-libdir && mkdir GeneRegionScan.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneRegionScan.buildbin-libdir GeneRegionScan_1.44.0.tar.gz
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install for i386
* installing *source* package 'GeneRegionScan' ...
** using staged installation
** R
** data
** exec
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'GeneRegionScan'
finding HTML links ... done
Nondocumented-objects html
ProbeLevelSet-class html
addSnpPdata html
checkForFileInPath html
doProbeLinear html
doProbeTTest html
exampleProbeLevelSet html
excludeDoubleMatchingProbes html
exonStructure html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp2jeC8P/R.INSTALL1d34572278bf/GeneRegionScan/man/exonStructure.rd:21: file link 'DNAString' in package 'Biostrings' does not exist and so has been treated as a topic
findProbePositions html
findSequenceInGenome html
geneRegionScan html
genomic html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp2jeC8P/R.INSTALL1d34572278bf/GeneRegionScan/man/genomic.Rd:13: file link 'readDNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
getLocalMetaprobeIntensities html
getLocalProbeIntensities html
getMetaprobesetsFromRegionOfInterest html
getProbeLevelAnnotationForExonArrays html
getProbesetsFromMetaprobeset html
getProbesetsFromRegionOfInterest html
getSequence html
getServerProbeIntensities html
mrna html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp2jeC8P/R.INSTALL1d34572278bf/GeneRegionScan/man/mrna.Rd:12: file link 'readDNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
plotCoexpression html
plotOnGene html
plotStatistics html
readGeneInput html
translateSampleNames html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'GeneRegionScan' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GeneRegionScan' as GeneRegionScan_1.44.0.zip
* DONE (GeneRegionScan)