Kevin Rue-Albrecht
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/GOexpress |
| Branch: RELEASE_3_11 |
| Last Commit: 685e16d |
| Last Changed Date: 2020-04-27 14:43:14 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:43 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE GOexpress PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 749/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| GOexpress 1.22.0 Kevin Rue-Albrecht
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: GOexpress |
| Version: 1.22.0 |
| Command: rm -rf GOexpress.buildbin-libdir && mkdir GOexpress.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GOexpress.buildbin-libdir GOexpress_1.22.0.tar.gz |
| StartedAt: 2020-10-17 10:40:38 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 10:41:27 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 48.7 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: GOexpress_1.22.0.zip |
| PackageFileSize: 3.061 MiB |
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### Running command:
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### rm -rf GOexpress.buildbin-libdir && mkdir GOexpress.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GOexpress.buildbin-libdir GOexpress_1.22.0.tar.gz
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install for i386
* installing *source* package 'GOexpress' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'GOexpress'
finding HTML links ... done
AlvMac html
AlvMac_GOgenes html
AlvMac_allGO html
AlvMac_allgenes html
AlvMac_results html
AlvMac_results.pVal html
GO_analyse html
GOexpress-package html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpUx1UK0/R.INSTALL2fa43de05c2c/GOexpress/man/GOexpress-package.Rd:100: file link 'Biobase' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpUx1UK0/R.INSTALL2fa43de05c2c/GOexpress/man/GOexpress-package.Rd:102: file link 'RColorBrewer' in package 'RColorBrewer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpUx1UK0/R.INSTALL2fa43de05c2c/GOexpress/man/GOexpress-package.Rd:103: file link 'VennDiagram' in package 'VennDiagram' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpUx1UK0/R.INSTALL2fa43de05c2c/GOexpress/man/GOexpress-package.Rd:109: file link 'bluered' in package 'gplots' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpUx1UK0/R.INSTALL2fa43de05c2c/GOexpress/man/GOexpress-package.Rd:110: file link 'greenred' in package 'gplots' does not exist and so has been treated as a topic
cluster_GO html
expression_plot html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpUx1UK0/R.INSTALL2fa43de05c2c/GOexpress/man/expression_plot.Rd:140: file link 'Biobase' in package 'Biobase' does not exist and so has been treated as a topic
expression_plot_symbol html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpUx1UK0/R.INSTALL2fa43de05c2c/GOexpress/man/expression_plot_symbol.Rd:152: file link 'Biobase' in package 'Biobase' does not exist and so has been treated as a topic
expression_profiles html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpUx1UK0/R.INSTALL2fa43de05c2c/GOexpress/man/expression_profiles.Rd:154: file link 'Biobase' in package 'Biobase' does not exist and so has been treated as a topic
expression_profiles_symbol html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpUx1UK0/R.INSTALL2fa43de05c2c/GOexpress/man/expression_profiles_symbol.Rd:161: file link 'Biobase' in package 'Biobase' does not exist and so has been treated as a topic
heatmap_GO html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpUx1UK0/R.INSTALL2fa43de05c2c/GOexpress/man/heatmap_GO.Rd:139: file link 'brewer.pal.info' in package 'RColorBrewer' does not exist and so has been treated as a topic
hist_scores html
list_genes html
microarray2dataset html
pValue_GO html
plot_design html
prefix2dataset html
quantiles_scores html
rerank html
subEset html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpUx1UK0/R.INSTALL2fa43de05c2c/GOexpress/man/subEset.Rd:46: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
subset_scores html
table_genes html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'GOexpress' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GOexpress' as GOexpress_1.22.0.zip
* DONE (GOexpress)