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BUILD BIN report for DChIPRep on tokay2

This page was generated on 2020-10-17 11:56:25 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE DChIPRep PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 426/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DChIPRep 1.18.0
Bernd Klaus
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/DChIPRep
Branch: RELEASE_3_11
Last Commit: 51f779c
Last Changed Date: 2020-04-27 14:52:12 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: DChIPRep
Version: 1.18.0
Command: rm -rf DChIPRep.buildbin-libdir && mkdir DChIPRep.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DChIPRep.buildbin-libdir DChIPRep_1.18.0.tar.gz
StartedAt: 2020-10-17 10:16:19 -0400 (Sat, 17 Oct 2020)
EndedAt: 2020-10-17 10:18:20 -0400 (Sat, 17 Oct 2020)
EllapsedTime: 120.5 seconds
RetCode: 0
Status:  OK  
PackageFile: DChIPRep_1.18.0.zip
PackageFileSize: 1.715 MiB

Command output

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### Running command:
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###   rm -rf DChIPRep.buildbin-libdir && mkdir DChIPRep.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DChIPRep.buildbin-libdir DChIPRep_1.18.0.tar.gz
###
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install for i386

* installing *source* package 'DChIPRep' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB

** exec
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'DChIPRep'
    finding HTML links ... done
    DChIPRep                                html  
    DChIPRepResults                         html  
    DESeq2Data                              html  
    FDRresults                              html  
    TSS_galonska                            html  
    chip_galonska                           html  
    exampleChipData                         html  
    exampleInputData                        html  
    exampleSampleTable                      html  
    getMATfromDataFrame                     html  
    importData                              html  
    importDataFromMatrices                  html  
    importData_soGGi                        html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpyCwVbJ/R.INSTALL19706dd73900/DChIPRep/man/importData_soGGi.Rd:36: file link 'regionPlot' in package 'soGGi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpyCwVbJ/R.INSTALL19706dd73900/DChIPRep/man/importData_soGGi.Rd:14: file link 'GenomicRanges-class' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpyCwVbJ/R.INSTALL19706dd73900/DChIPRep/man/importData_soGGi.Rd:27: file link 'regionPlot' in package 'soGGi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpyCwVbJ/R.INSTALL19706dd73900/DChIPRep/man/importData_soGGi.Rd:65: file link 'regionPlot' in package 'soGGi' does not exist and so has been treated as a topic
    input_galonska                          html  
    plotProfiles                            html  
    plotSignificance                        html  
    resultsDChIPRep                         html  
    robust_mean                             html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpyCwVbJ/R.INSTALL19706dd73900/DChIPRep/man/robust_mean.Rd:17: file link 'smhuber' in package 'smoothmest' does not exist and so has been treated as a topic
    runTesting                              html  
    sample_table_galonska                   html  
    show                                    html  
    summarizeCountsPerPosition              html  
    testData                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'DChIPRep' is deprecated and will be removed from Bioconductor
  version 3.12
** testing if installed package can be loaded from final location
Warning: Package 'DChIPRep' is deprecated and will be removed from Bioconductor
  version 3.12
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'DChIPRep' ...
** testing if installed package can be loaded
Warning: Package 'DChIPRep' is deprecated and will be removed from Bioconductor
  version 3.12
* MD5 sums
packaged installation of 'DChIPRep' as DChIPRep_1.18.0.zip
* DONE (DChIPRep)