Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-03-12 13:45:28 -0400 (Thu, 12 Mar 2020).
Package 369/1838 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
CorMut 1.29.0 Zhenpeng Li
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK |
Package: CorMut |
Version: 1.29.0 |
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:CorMut.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings CorMut_1.29.0.tar.gz |
StartedAt: 2020-03-12 02:02:15 -0400 (Thu, 12 Mar 2020) |
EndedAt: 2020-03-12 02:03:40 -0400 (Thu, 12 Mar 2020) |
EllapsedTime: 85.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: CorMut.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:CorMut.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings CorMut_1.29.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.11-bioc/meat/CorMut.Rcheck’ * using R Under development (unstable) (2020-01-28 r77731) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘CorMut/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘CorMut’ version ‘1.29.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘CorMut’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed biCompare-methods 19.294 0.019 19.404 miAA 8.330 0.008 8.339 miCodon 7.267 0.000 7.267 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
CorMut.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL CorMut ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘CorMut’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Warning in .recursiveCallTest(body, fname) : the body of the generic function for ‘seq_num.CorMut’ calls 'standardGeneric' to dispatch on a different name ("aslot")! Warning in .recursiveCallTest(body, fname) : the body of the generic function for ‘kaks.CorMut’ calls 'standardGeneric' to dispatch on a different name ("aslot")! Warning in .recursiveCallTest(body, fname) : the body of the generic function for ‘lod.CorMut’ calls 'standardGeneric' to dispatch on a different name ("aslot")! Warning in .recursiveCallTest(body, fname) : the body of the generic function for ‘q.CorMut’ calls 'standardGeneric' to dispatch on a different name ("aslot")! Warning in .recursiveCallTest(body, fname) : the body of the generic function for ‘ka.CorMut’ calls 'standardGeneric' to dispatch on a different name ("aslot")! Warning in .recursiveCallTest(body, fname) : the body of the generic function for ‘ks.CorMut’ calls 'standardGeneric' to dispatch on a different name ("aslot")! Warning in .recursiveCallTest(body, fname) : the body of the generic function for ‘mi.CorMut’ calls 'standardGeneric' to dispatch on a different name ("aslot")! Warning in .recursiveCallTest(body, fname) : the body of the generic function for ‘p.value.CorMut’ calls 'standardGeneric' to dispatch on a different name ("aslot")! Warning in .recursiveCallTest(body, fname) : the body of the generic function for ‘ckaks.CorMut’ calls 'standardGeneric' to dispatch on a different name ("aslot")! Warning in .recursiveCallTest(body, fname) : the body of the generic function for ‘method.CorMut’ calls 'standardGeneric' to dispatch on a different name ("aslot")! Warning in .recursiveCallTest(body, fname) : the body of the generic function for ‘positiveSite01.CorMut’ calls 'standardGeneric' to dispatch on a different name ("aslot")! Warning in .recursiveCallTest(body, fname) : the body of the generic function for ‘positiveSite02.CorMut’ calls 'standardGeneric' to dispatch on a different name ("aslot")! Warning in .recursiveCallTest(body, fname) : the body of the generic function for ‘state_1.CorMut’ calls 'standardGeneric' to dispatch on a different name ("aslot")! Warning in .recursiveCallTest(body, fname) : the body of the generic function for ‘statistic_1.CorMut’ calls 'standardGeneric' to dispatch on a different name ("aslot")! Warning in .recursiveCallTest(body, fname) : the body of the generic function for ‘state_2.CorMut’ calls 'standardGeneric' to dispatch on a different name ("aslot")! Warning in .recursiveCallTest(body, fname) : the body of the generic function for ‘statistic_2.CorMut’ calls 'standardGeneric' to dispatch on a different name ("aslot")! ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CorMut)
CorMut.Rcheck/CorMut-Ex.timings
name | user | system | elapsed | |
JI-class | 0 | 0 | 0 | |
MI-class | 0.001 | 0.000 | 0.000 | |
biCkaksCodon-class | 0 | 0 | 0 | |
biCompare-class | 0 | 0 | 0 | |
biCompare-methods | 19.294 | 0.019 | 19.404 | |
ckaks-class | 0 | 0 | 0 | |
ckaksAA | 3.951 | 0.004 | 3.955 | |
ckaksCodon | 2.286 | 0.000 | 2.287 | |
filterSites-methods | 1.019 | 0.000 | 1.019 | |
jiAA | 3.259 | 0.016 | 3.277 | |
kaksAA-class | 0.000 | 0.000 | 0.001 | |
kaksAA | 2.071 | 0.000 | 2.071 | |
kaksCodon-class | 0 | 0 | 0 | |
kaksCodon | 2.029 | 0.000 | 2.030 | |
miAA | 8.330 | 0.008 | 8.339 | |
miCodon | 7.267 | 0.000 | 7.267 | |
plot-methods | 4.51 | 0.00 | 4.51 | |
seqFormat-methods | 0.784 | 0.000 | 0.784 | |