| Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:56:11 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE BPRMeth PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 196/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| BPRMeth 1.14.1 Chantriolnt-Andreas Kapourani
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
| Package: BPRMeth |
| Version: 1.14.1 |
| Command: rm -rf BPRMeth.buildbin-libdir && mkdir BPRMeth.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BPRMeth.buildbin-libdir BPRMeth_1.14.1.tar.gz |
| StartedAt: 2020-10-17 09:58:42 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 10:00:21 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 99.2 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: BPRMeth_1.14.1.zip |
| PackageFileSize: 3.703 MiB |
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### Running command:
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### rm -rf BPRMeth.buildbin-libdir && mkdir BPRMeth.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BPRMeth.buildbin-libdir BPRMeth_1.14.1.tar.gz
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install for i386
* installing *source* package 'BPRMeth' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c model_likelihood.cpp -o model_likelihood.o
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o BPRMeth.dll tmp.def RcppExports.o model_likelihood.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/BPRMeth.buildbin-libdir/00LOCK-BPRMeth/00new/BPRMeth/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'BPRMeth'
finding HTML links ... done
BPRMeth html
bernoulli_data html
beta_data html
binomial_data html
boxplot_cluster_expr html
bpr_cluster_wrap html
bpr_optimize html
bpr_predict_wrap html
cluster_profiles_mle html
cluster_profiles_vb html
create_anno_region html
create_basis html
create_region_object html
design_matrix html
encode_expr html
encode_met html
eval_functions html
gaussian_data html
gex_data html
impute_bulk_met html
infer_profiles_gibbs html
infer_profiles_mle html
infer_profiles_vb html
inner_predict_model_expr html
inner_train_model_expr html
meth_data html
model_log_likelihood html
old_boxplot_cluster_gex html
old_plot_cluster_prof html
old_plot_fitted_profiles html
partition_bulk_dataset html
plot_cluster_profiles html
plot_infer_profiles html
finding level-2 HTML links ... done
plot_predicted_expr html
pool_bs_seq_rep html
predict_expr html
preprocess_bs_seq html
preprocess_final_HTS_data html
process_haib_caltech_wrap html
read_anno html
read_bs_encode_haib html
read_chrom_size html
read_expr html
read_met html
read_rna_encode_caltech html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'BPRMeth' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c model_likelihood.cpp -o model_likelihood.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o BPRMeth.dll tmp.def RcppExports.o model_likelihood.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/BPRMeth.buildbin-libdir/BPRMeth/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BPRMeth' as BPRMeth_1.14.1.zip
* DONE (BPRMeth)