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CHECK report for unifiedWMWqPCR on malbec2

This page was generated on 2020-10-17 11:55:59 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE unifiedWMWqPCR PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1857/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
unifiedWMWqPCR 1.24.0
Joris Meys
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/unifiedWMWqPCR
Branch: RELEASE_3_11
Last Commit: 6d9cda6
Last Changed Date: 2020-04-27 14:38:34 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK [ WARNINGS ]UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  NA 
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: unifiedWMWqPCR
Version: 1.24.0
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:unifiedWMWqPCR.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings unifiedWMWqPCR_1.24.0.tar.gz
StartedAt: 2020-10-17 06:19:33 -0400 (Sat, 17 Oct 2020)
EndedAt: 2020-10-17 06:20:32 -0400 (Sat, 17 Oct 2020)
EllapsedTime: 59.1 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: unifiedWMWqPCR.Rcheck
Warnings: 1

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:unifiedWMWqPCR.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings unifiedWMWqPCR_1.24.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.11-bioc/meat/unifiedWMWqPCR.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘unifiedWMWqPCR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘unifiedWMWqPCR’ version ‘1.24.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘unifiedWMWqPCR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... WARNING
Documented arguments not in \usage in documentation object 'getEstimate':
  ‘...’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING
See
  ‘/home/biocbuild/bbs-3.11-bioc/meat/unifiedWMWqPCR.Rcheck/00check.log’
for details.



Installation output

unifiedWMWqPCR.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL unifiedWMWqPCR
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’
* installing *source* package ‘unifiedWMWqPCR’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘order’ from package ‘base’ in package ‘unifiedWMWqPCR’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (unifiedWMWqPCR)

Tests output


Example timings

unifiedWMWqPCR.Rcheck/unifiedWMWqPCR-Ex.timings

nameusersystemelapsed
NBdata0.0320.0080.040
as.matrix.uwmwEstimate0.3250.0040.329
as.matrix.uwmwRes0.2560.0040.260
forestplot-methods0.3980.0010.398
getEstimate-methods0.3210.0070.329
plot0.2920.0000.292
sort_uwmwRes0.2530.0000.253
uWMW-methods0.5300.0060.537
uwmw_Accessors0.3370.0010.338
uwmw_Extract0.2580.0000.258
volcanopar000
volcanoplot-methods0.2950.0000.297