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INSTALL report for uSORT on tokay2

This page was generated on 2020-10-17 11:57:58 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE uSORT PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1861/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
uSORT 1.14.0
Hao Chen
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/uSORT
Branch: RELEASE_3_11
Last Commit: 5a47479
Last Changed Date: 2020-04-27 15:01:58 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  NA 
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: uSORT
Version: 1.14.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/uSORT_1.14.0.tar.gz && rm -rf uSORT.buildbin-libdir && mkdir uSORT.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=uSORT.buildbin-libdir uSORT_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL uSORT_1.14.0.zip && rm uSORT_1.14.0.tar.gz uSORT_1.14.0.zip
StartedAt: 2020-10-16 18:13:38 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 18:14:19 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 41.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/uSORT_1.14.0.tar.gz && rm -rf uSORT.buildbin-libdir && mkdir uSORT.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=uSORT.buildbin-libdir uSORT_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL uSORT_1.14.0.zip && rm uSORT_1.14.0.tar.gz uSORT_1.14.0.zip
###
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100 1641k  100 1641k    0     0  17.7M      0 --:--:-- --:--:-- --:--:-- 19.3M

install for i386

* installing *source* package 'uSORT' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Note: break used in wrong context: no loop is visible 
** help
*** installing help indices
  converting help for package 'uSORT'
    finding HTML links ... done
    EXP_to_CellDataSet                      html  
    Rwanderlust                             html  
    SPIN                                    html  
    STS_sorting                             html  
    STS_sorting_wrapper                     html  
    STS_sortingcost                         html  
    autoSPIN                                html  
    clusterGenes1                           html  
    compareModels1                          html  
    diff_test_helper1                       html  
    differentialGeneTest1                   html  
    distance.function                       html  
    driving_force_gene_selection            html  
    elbow_detection                         html  
    fluidigmSC_analyzeGeneDetection         html  
    fluidigmSC_identifyExpOutliers          html  
    fluidigmSC_isElementIgnoreCase          html  
    fluidigmSC_readLinearExp                html  
    fluidigmSC_removeGenesByLinearExpForAllType
                                            html  
    fluidigmSC_removeGenesByLinearExpForAllType_log2
                                            html  
    monocle_wrapper                         html  
    neighborhood_sorting                    html  
    neighborhood_sorting_wrapper            html  
    neighborhood_sortingcost                html  
    pca_gene_selection                      html  
    sWanderlust                             html  
    scattering_quantification_per_gene      html  
    sorting_method_parameter_GUI            html  
    summed_local_variance                   html  
    summed_local_variance_cyclical          html  
    summed_local_variance_linear            html  
    trajectory_landmarks                    html  
    uSORT                                   html  
    uSORT_GUI                               html  
    uSORT_parameters_GUI                    html  
    uSORT_preProcess                        html  
    uSORT_sorting_wrapper                   html  
    uSORT_write_results                     html  
    variability_per_gene                    html  
    wanderlust_wrapper                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'uSORT' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'uSORT' as uSORT_1.14.0.zip
* DONE (uSORT)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'uSORT' successfully unpacked and MD5 sums checked