| Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:59:50 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE twoddpcr PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1850/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| twoddpcr 1.12.0 Anthony Chiu
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | NA | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | [ OK ] | OK |
| Package: twoddpcr |
| Version: 1.12.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:twoddpcr.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings twoddpcr_1.12.0.tar.gz |
| StartedAt: 2020-10-17 06:08:03 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 06:11:08 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 184.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: twoddpcr.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:twoddpcr.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings twoddpcr_1.12.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/twoddpcr.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘twoddpcr/DESCRIPTION’ ... OK
* this is package ‘twoddpcr’ version ‘1.12.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘twoddpcr’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
knnClassify 10.166 0.150 10.329
ggplot.well 7.959 0.237 8.210
gridClassify 6.462 0.127 6.601
renormalisePlate 5.376 0.111 5.491
dropletPlot 4.909 0.233 5.158
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
twoddpcr.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL twoddpcr ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘twoddpcr’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (twoddpcr)
twoddpcr.Rcheck/tests/testthat.Rout
R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(twoddpcr)
>
> test_check("twoddpcr")
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 156 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ]
>
> proc.time()
user system elapsed
11.562 0.579 12.134
twoddpcr.Rcheck/twoddpcr-Ex.timings
| name | user | system | elapsed | |
| amplitudes | 0.652 | 0.040 | 0.692 | |
| basicsSummary | 0.012 | 0.002 | 0.014 | |
| castSummary | 0.033 | 0.010 | 0.042 | |
| classCov | 0.086 | 0.012 | 0.097 | |
| classMeans | 0.106 | 0.011 | 0.117 | |
| classStats | 0.093 | 0.021 | 0.114 | |
| clusterCentres | 1.141 | 0.063 | 1.205 | |
| copiesSummary | 0.007 | 0.001 | 0.009 | |
| ddpcrPlate-class | 0.408 | 0.007 | 0.416 | |
| ddpcrWell-class | 0.046 | 0.002 | 0.048 | |
| ddpcrWell-methods | 0.458 | 0.008 | 0.466 | |
| dropletPlot | 4.909 | 0.233 | 5.158 | |
| exportTable | 0.232 | 0.022 | 0.257 | |
| extractPlateName | 0 | 0 | 0 | |
| extractWellNames | 0.001 | 0.001 | 0.001 | |
| facetPlot | 3.040 | 0.067 | 3.110 | |
| flatPlot | 4.676 | 0.218 | 4.899 | |
| fullCopiesSummary | 0.013 | 0.003 | 0.016 | |
| fullCountsSummary | 0.047 | 0.009 | 0.056 | |
| ggplot.well | 7.959 | 0.237 | 8.210 | |
| gridClassify | 6.462 | 0.127 | 6.601 | |
| heatPlot | 1.935 | 0.056 | 1.995 | |
| kmeansClassify | 1.707 | 0.049 | 1.757 | |
| knnClassify | 10.166 | 0.150 | 10.329 | |
| mahalanobisRain | 0.993 | 0.023 | 1.018 | |
| mutantCopiesSummary | 0.009 | 0.002 | 0.010 | |
| numDroplets | 0.495 | 0.006 | 0.501 | |
| parseClusterCounts | 0.017 | 0.004 | 0.021 | |
| plateClassification | 1.824 | 0.034 | 1.858 | |
| plateClassificationMethod | 0.675 | 0.006 | 0.682 | |
| plateSummary | 2.338 | 0.017 | 2.359 | |
| positiveCounts | 0.111 | 0.003 | 0.114 | |
| readCSVDataFrame | 0.017 | 0.003 | 0.020 | |
| relabelClasses | 0.079 | 0.002 | 0.081 | |
| removeDropletClasses | 1.164 | 0.025 | 1.190 | |
| renormalisePlate | 5.376 | 0.111 | 5.491 | |
| sdRain | 3.539 | 0.037 | 3.578 | |
| setChannelNames | 0.002 | 0.001 | 0.004 | |
| setDropletVolume | 0.001 | 0.000 | 0.001 | |
| sortDataFrame | 0.003 | 0.002 | 0.005 | |
| sortWells | 0.471 | 0.005 | 0.476 | |
| thresholdClassify | 2.272 | 0.027 | 2.301 | |
| wellClassification | 0.035 | 0.001 | 0.037 | |
| wellClassificationMethod | 0.029 | 0.000 | 0.030 | |
| whiteTheme | 1.727 | 0.040 | 1.777 | |
| wildTypeCopiesSummary | 0.008 | 0.002 | 0.010 | |