Thomas Girke
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/systemPipeR |
| Branch: RELEASE_3_11 |
| Last Commit: 4cdf9f1 |
| Last Changed Date: 2020-04-27 14:43:09 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:55 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE systemPipeR PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1776/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| systemPipeR 1.22.0 Thomas Girke
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | NA | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: systemPipeR |
| Version: 1.22.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/systemPipeR_1.22.0.tar.gz && rm -rf systemPipeR.buildbin-libdir && mkdir systemPipeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=systemPipeR.buildbin-libdir systemPipeR_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL systemPipeR_1.22.0.zip && rm systemPipeR_1.22.0.tar.gz systemPipeR_1.22.0.zip |
| StartedAt: 2020-10-16 19:13:00 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 19:15:18 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 138.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/systemPipeR_1.22.0.tar.gz && rm -rf systemPipeR.buildbin-libdir && mkdir systemPipeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=systemPipeR.buildbin-libdir systemPipeR_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL systemPipeR_1.22.0.zip && rm systemPipeR_1.22.0.tar.gz systemPipeR_1.22.0.zip
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install for i386
* installing *source* package 'systemPipeR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'systemPipeR'
finding HTML links ... done
GOHyperGAll html
INTERSECTset-class html
SYSargs-class html
SYSargs2-class html
SYSargs2Pipe-class html
SYSargs2Pipe-methods html
SYSargsList-class html
VENNset-class html
alignStats html
catDB-class html
catmap html
clusterRun html
config.param html
configWF html
countRangeset html
createWF html
evalCode html
featureCoverage html
featuretypeCounts html
filterDEGs html
filterVars html
genFeatures html
getQsubargs html
initWF html
loadWorkflow html
mergeBamByFactor html
module html
moduleload html
olBarplot html
olRanges html
output_update html
overLapper html
plotWF html
plotfeatureCoverage html
plotfeaturetypeCounts html
predORF html
preprocessReads html
qsubRun html
readComp html
renderReport html
renderWF html
returnRPKM html
runCommandline html
runDiff html
runWF html
run_DESeq2 html
run_edgeR html
run_track html
scaleRanges html
seeFastq html
subsetWF html
symLink2bam html
sysargs html
sysargs2-methods html
sysargslist-methods html
systemArgs html
targets.as.df html
tryCL html
tryPath html
variantReport html
vennPlot html
writeTargetsRef html
writeTargetsout html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'systemPipeR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'systemPipeR' as systemPipeR_1.22.0.zip
* DONE (systemPipeR)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'systemPipeR' successfully unpacked and MD5 sums checked