Zytnicki Matthias
| Snapshot Date: 2020-10-15 14:40:03 -0400 (Thu, 15 Oct 2020) |
| URL: https://git.bioconductor.org/packages/srnadiff |
| Branch: RELEASE_3_11 |
| Last Commit: 3eb715d |
| Last Changed Date: 2020-10-13 05:48:40 -0400 (Tue, 13 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-16 11:58:58 -0400 (Fri, 16 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE srnadiff PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1730/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| srnadiff 1.8.2 Zytnicki Matthias
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | TIMEOUT | [ OK ] | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: srnadiff |
| Version: 1.8.2 |
| Command: rm -rf srnadiff.buildbin-libdir && mkdir srnadiff.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=srnadiff.buildbin-libdir srnadiff_1.8.2.tar.gz |
| StartedAt: 2020-10-16 11:24:33 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 11:26:59 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 146.6 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: srnadiff_1.8.2.zip |
| PackageFileSize: 3.335 MiB |
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### Running command:
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### rm -rf srnadiff.buildbin-libdir && mkdir srnadiff.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=srnadiff.buildbin-libdir srnadiff_1.8.2.tar.gz
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install for i386
* installing *source* package 'srnadiff' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rcpp_hmm.cpp -o rcpp_hmm.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rcpp_ir.cpp -o rcpp_ir.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rcpp_main.cpp -o rcpp_main.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rcpp_utils.cpp -o rcpp_utils.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c srnadiff_init.c -o srnadiff_init.o
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o srnadiff.dll tmp.def RcppExports.o rcpp_hmm.o rcpp_ir.o rcpp_main.o rcpp_utils.o srnadiff_init.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/srnadiff.buildbin-libdir/00LOCK-srnadiff/00new/srnadiff/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'srnadiff'
finding HTML links ... done
annotReg html
bamFiles html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpQzWEP9/R.INSTALL16f87d2b2af8/srnadiff/man/bamFiles.Rd:19: file link 'BamFileList' in package 'Rsamtools' does not exist and so has been treated as a topic
chromosomeSizes html
countMatrix html
coverages html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpQzWEP9/R.INSTALL16f87d2b2af8/srnadiff/man/coverages.Rd:19: file link 'RleList' in package 'IRanges' does not exist and so has been treated as a topic
normFactors html
parameters html
plotRegions html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpQzWEP9/R.INSTALL16f87d2b2af8/srnadiff/man/plotRegions.Rd:87: file link 'GenomeAxisTrack' in package 'Gviz' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpQzWEP9/R.INSTALL16f87d2b2af8/srnadiff/man/plotRegions.Rd:90: file link 'GeneRegionTrack' in package 'Gviz' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpQzWEP9/R.INSTALL16f87d2b2af8/srnadiff/man/plotRegions.Rd:93: file link 'AnnotationTrack' in package 'Gviz' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpQzWEP9/R.INSTALL16f87d2b2af8/srnadiff/man/plotRegions.Rd:96: file link 'DataTrack' in package 'Gviz' does not exist and so has been treated as a topic
readAnnotation html
regions html
sampleInfo html
srnadiff html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpQzWEP9/R.INSTALL16f87d2b2af8/srnadiff/man/srnadiff.Rd:28: file link 'multicoreWorkers' in package 'BiocParallel' does not exist and so has been treated as a topic
srnadiffDefaultParameters html
srnadiffExample html
srnadiffExp html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpQzWEP9/R.INSTALL16f87d2b2af8/srnadiff/man/srnadiffExp.Rd:59: file link 'BamFileList' in package 'Rsamtools' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpQzWEP9/R.INSTALL16f87d2b2af8/srnadiff/man/srnadiffExp.Rd:70: file link 'RleList' in package 'IRanges' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'srnadiff' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rcpp_hmm.cpp -o rcpp_hmm.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rcpp_ir.cpp -o rcpp_ir.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rcpp_main.cpp -o rcpp_main.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rcpp_utils.cpp -o rcpp_utils.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c srnadiff_init.c -o srnadiff_init.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o srnadiff.dll tmp.def RcppExports.o rcpp_hmm.o rcpp_ir.o rcpp_main.o rcpp_utils.o srnadiff_init.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/srnadiff.buildbin-libdir/srnadiff/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'srnadiff' as srnadiff_1.8.2.zip
* DONE (srnadiff)