Back to Multiple platform build/check report for BioC 3.11
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

INSTALL report for singleCellTK on tokay2

This page was generated on 2020-10-17 11:57:49 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE singleCellTK PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1673/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
singleCellTK 1.8.0
David Jenkins
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/singleCellTK
Branch: RELEASE_3_11
Last Commit: ed17c59
Last Changed Date: 2020-04-27 15:16:09 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  NA 
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: singleCellTK
Version: 1.8.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/singleCellTK_1.8.0.tar.gz && rm -rf singleCellTK.buildbin-libdir && mkdir singleCellTK.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=singleCellTK.buildbin-libdir singleCellTK_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL singleCellTK_1.8.0.zip && rm singleCellTK_1.8.0.tar.gz singleCellTK_1.8.0.zip
StartedAt: 2020-10-16 19:08:31 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 19:09:49 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 77.5 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/singleCellTK_1.8.0.tar.gz && rm -rf singleCellTK.buildbin-libdir && mkdir singleCellTK.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=singleCellTK.buildbin-libdir singleCellTK_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL singleCellTK_1.8.0.zip && rm singleCellTK_1.8.0.tar.gz singleCellTK_1.8.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  426k  100  426k    0     0  5723k      0 --:--:-- --:--:-- --:--:-- 6274k

install for i386

* installing *source* package 'singleCellTK' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'singleCellTK'
    finding HTML links ... done
    ComBatSCE                               html  
    DownsampleCells                         html  
    DownsampleDepth                         html  
    MAST                                    html  
    SCtkExperiment-class                    html  
    SCtkExperiment                          html  
    alignSingleCellData                     html  
    calcEffectSizes                         html  
    convertGeneIDs                          html  
    createSCE                               html  
    distinctColors                          html  
    enrichRSCE                              html  
    filterSCData                            html  
    generateSimulatedData                   html  
    getBiomarker                            html  
    getClusterInputData                     html  
    getPCA                                  html  
    getTSNE                                 html  
    getUMAP                                 html  
    gsvaSCE                                 html  
    iterateSimulations                      html  
    mouseBrainSubsetSCE                     html  
    parseRsubreadLogs                       html  
    pcaVariances-set                        html  
    pcaVariances                            html  
    plotBatchVariance                       html  
    plotBiomarker                           html  
    plotDiffEx                              html  
    plotDimRed                              html  
    plotPCA                                 html  
    plotTSNE                                html  
    plotUMAP                                html  
    saveBiomarkerRes                        html  
    saveDiffExResults                       html  
    scDiffEx                                html  
    singleCellTK                            html  
    subDiffEx                               html  
    summarizeTable                          html  
    visPlot                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'singleCellTK' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'singleCellTK' as singleCellTK_1.8.0.zip
* DONE (singleCellTK)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'singleCellTK' successfully unpacked and MD5 sums checked