Vladimir Kiselev
| Snapshot Date: 2020-01-12 16:45:10 -0500 (Sun, 12 Jan 2020) |
| URL: https://git.bioconductor.org/packages/scfind |
| Branch: master |
| Last Commit: 3b71b64 |
| Last Changed Date: 2019-10-29 13:42:28 -0500 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-01-13 13:18:30 -0500 (Mon, 13 Jan 2020).
| Package 1523/1813 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| scfind 1.9.0 Vladimir Kiselev
| malbec2 | Linux (Ubuntu 18.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: scfind |
| Version: 1.9.0 |
| Command: rm -rf scfind.buildbin-libdir && mkdir scfind.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scfind.buildbin-libdir scfind_1.9.0.tar.gz |
| StartedAt: 2020-01-13 11:23:28 -0500 (Mon, 13 Jan 2020) |
| EndedAt: 2020-01-13 11:24:26 -0500 (Mon, 13 Jan 2020) |
| EllapsedTime: 57.5 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: scfind_1.9.0.zip |
| PackageFileSize: 3.383 MiB |
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### Running command:
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### rm -rf scfind.buildbin-libdir && mkdir scfind.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scfind.buildbin-libdir scfind_1.9.0.tar.gz
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install for i386
* installing *source* package 'scfind' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c eliasFano.cpp -o eliasFano.o
eliasFano.cpp: In function 'std::vector<bool> int2bin(int)':
eliasFano.cpp:8:9: warning: unused variable 'rem' [-Wunused-variable]
int rem;
^
eliasFano.cpp: In function 'Rcpp::NumericVector eliasFanoDecoding(Rcpp::LogicalVector, Rcpp::LogicalVector, int)':
eliasFano.cpp:83:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int k = 0; k < h.size(); k++) {
^
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o scfind.dll tmp.def RcppExports.o eliasFano.o -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/scfind.buildbin-libdir/00LOCK-scfind/00new/scfind/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'scfind'
finding HTML links ... done
ann html
buildCellIndex html
buildCellTypeIndex html
findCell html
findCellType html
yan html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'scfind' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c eliasFano.cpp -o eliasFano.o
eliasFano.cpp: In function 'std::vector<bool> int2bin(int)':
eliasFano.cpp:8:9: warning: unused variable 'rem' [-Wunused-variable]
int rem;
^
eliasFano.cpp: In function 'Rcpp::NumericVector eliasFanoDecoding(Rcpp::LogicalVector, Rcpp::LogicalVector, int)':
eliasFano.cpp:83:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int k = 0; k < h.size(); k++) {
^
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o scfind.dll tmp.def RcppExports.o eliasFano.o -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/scfind.buildbin-libdir/scfind/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'scfind' as scfind_1.9.0.zip
* DONE (scfind)