Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:55:33 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE rexposome PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1469/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
rexposome 1.10.0 Carles Hernandez-Ferrer
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: rexposome |
Version: 1.10.0 |
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:rexposome.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings rexposome_1.10.0.tar.gz |
StartedAt: 2020-10-17 04:43:40 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 04:46:40 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 180.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: rexposome.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:rexposome.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings rexposome_1.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.11-bioc/meat/rexposome.Rcheck’ * using R version 4.0.3 (2020-10-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘rexposome/DESCRIPTION’ ... OK * this is package ‘rexposome’ version ‘1.10.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘rexposome’ can be installed ... OK * checking installed package size ... NOTE installed size is 5.9Mb sub-directories of 1Mb or more: data 2.8Mb extdata 2.2Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE imputeLOD: multiple local function definitions for ‘faux’ with different formal arguments plotHistogram,ExposomeSet: no visible binding for global variable ‘..density..’ Undefined global functions or variables: ..density.. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed clustering-methods 20.380 0.016 20.395 plotCorrelation-methods 13.179 0.008 13.187 correlation-methods 5.686 0.000 5.687 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.11-bioc/meat/rexposome.Rcheck/00check.log’ for details.
rexposome.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL rexposome ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘rexposome’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rexposome)
rexposome.Rcheck/rexposome-Ex.timings
name | user | system | elapsed | |
classification-methods | 0.018 | 0.000 | 0.019 | |
clustering-methods | 20.380 | 0.016 | 20.395 | |
correlation-methods | 5.686 | 0.000 | 5.687 | |
ex_imp | 0.025 | 0.000 | 0.025 | |
expo | 0.016 | 0.008 | 0.024 | |
expo_c | 0.012 | 0.000 | 0.012 | |
expos-methods | 0.243 | 0.004 | 0.247 | |
exposureNames-methods | 0.020 | 0.004 | 0.025 | |
exwas-methods | 0.544 | 0.000 | 0.544 | |
familyNames-methods | 0.019 | 0.000 | 0.018 | |
highAndLow-methods | 1.306 | 0.000 | 1.306 | |
ilod-methods | 0.001 | 0.000 | 0.000 | |
imputation-methods | 0.001 | 0.000 | 0.000 | |
imputeLOD | 0.001 | 0.000 | 0.000 | |
loadExposome | 0.035 | 0.004 | 0.069 | |
loadImputed | 0.014 | 0.000 | 0.014 | |
me | 0.002 | 0.000 | 0.003 | |
mexwas-methods | 1.513 | 0.000 | 1.513 | |
ndim-methods | 0.075 | 0.000 | 0.075 | |
normalityTest-methods | 0.288 | 0.000 | 0.288 | |
pca-methods | 0.051 | 0.004 | 0.055 | |
phenotypeNames-methods | 0.008 | 0.012 | 0.020 | |
plotClassification-methods | 0 | 0 | 0 | |
plotCorrelation-methods | 13.179 | 0.008 | 13.187 | |
plotEXP-methods | 0.251 | 0.000 | 0.251 | |
plotEffect-methods | 0.68 | 0.00 | 0.68 | |
plotExwas-methods | 0.452 | 0.000 | 0.452 | |
plotFamily-methods | 2.334 | 0.008 | 2.342 | |
plotHistogram-methods | 0.211 | 0.000 | 0.212 | |
plotLOD-methods | 0.391 | 0.000 | 0.391 | |
plotMissings-methods | 0.388 | 0.000 | 0.388 | |
plotPCA-methods | 1.243 | 0.024 | 1.267 | |
plotPHE-methods | 0.220 | 0.008 | 0.228 | |
readExposome | 0.036 | 0.000 | 0.036 | |
standardize-methods | 0.637 | 0.012 | 0.649 | |
tableLOD-methods | 0.174 | 0.004 | 0.178 | |
tableMissings-methods | 0.043 | 0.000 | 0.044 | |
tef-methods | 0.265 | 0.001 | 0.265 | |
toES | 0.127 | 0.003 | 0.130 | |
trans-methods | 0.223 | 0.004 | 0.227 | |
volcano_plot | 0.689 | 0.000 | 0.689 | |