Joselyn Chavez
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/regutools |
| Branch: RELEASE_3_11 |
| Last Commit: 09bf04e |
| Last Changed Date: 2020-04-30 13:54:47 -0400 (Thu, 30 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:36 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE regutools PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1462/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| regutools 1.0.1 Joselyn Chavez
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: regutools |
| Version: 1.0.1 |
| Command: C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:regutools.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings regutools_1.0.1.tar.gz |
| StartedAt: 2020-10-17 07:25:30 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 07:43:02 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 1052.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: regutools.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:regutools.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings regutools_1.0.1.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.11-bioc/meat/regutools.Rcheck'
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'regutools/DESCRIPTION' ... OK
* this is package 'regutools' version '1.0.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'regutools' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
plot_dna_objects 12.78 0.68 13.56
regulondb 7.33 2.53 9.97
build_condition 7.39 0.82 8.55
get_gene_regulators 7.03 1.07 8.22
convert_to_granges 7.26 0.29 7.64
get_gene_synonyms 7.16 0.32 7.65
list_attributes 6.87 0.38 7.35
convert_to_biostrings 6.42 0.77 13.76
connect_database 6.45 0.70 7.25
get_dna_objects 6.42 0.62 7.28
get_dataset 6.44 0.55 7.08
get_regulatory_summary 6.54 0.40 7.03
get_binding_sites 6.61 0.30 7.35
get_regulatory_network 6.52 0.35 8.17
list_datasets 6.41 0.32 6.81
guess_id 6.21 0.44 6.72
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
plot_dna_objects 10.92 0.35 11.39
convert_to_granges 9.58 0.42 10.09
convert_to_biostrings 8.70 0.59 9.42
connect_database 8.27 0.41 8.75
build_condition 7.71 0.42 8.33
get_gene_regulators 7.26 0.34 7.71
regulondb 7.20 0.34 7.64
get_binding_sites 6.78 0.35 7.21
list_datasets 6.59 0.29 6.97
get_regulatory_summary 6.64 0.23 7.24
list_attributes 6.43 0.32 6.86
get_gene_synonyms 6.39 0.35 6.81
get_dataset 6.19 0.42 6.70
get_dna_objects 6.31 0.28 6.73
get_regulatory_network 6.05 0.23 8.59
guess_id 5.81 0.25 6.14
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
regutools.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/regutools_1.0.1.tar.gz && rm -rf regutools.buildbin-libdir && mkdir regutools.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=regutools.buildbin-libdir regutools_1.0.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL regutools_1.0.1.zip && rm regutools_1.0.1.tar.gz regutools_1.0.1.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 503k 100 503k 0 0 8423k 0 --:--:-- --:--:-- --:--:-- 9323k
install for i386
* installing *source* package 'regutools' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'regutools'
finding HTML links ... done
build_condition html
connect_database html
convert_to_biostrings html
convert_to_granges html
existing_intervals html
existing_partial_match html
get_binding_sites html
get_dataset html
get_dna_objects html
get_gene_regulators html
get_gene_synonyms html
get_regulatory_network html
get_regulatory_summary html
guess_id html
list_attributes html
list_datasets html
non_existing_intervals html
plot_dna_objects html
regulondb-class html
regulondb-methods html
regulondb html
regulondb_result-class html
regutools-package html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'regutools' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'regutools' as regutools_1.0.1.zip
* DONE (regutools)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'regutools' successfully unpacked and MD5 sums checked
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regutools.Rcheck/tests_i386/testthat.Rout
R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library("testthat")
> library("regutools")
>
> test_check("regutools")
== testthat results ===========================================================
[ OK: 110 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ]
Warning message:
call dbDisconnect() when finished working with a connection
>
> proc.time()
user system elapsed
122.32 8.12 140.20
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regutools.Rcheck/tests_x64/testthat.Rout
R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library("testthat")
> library("regutools")
>
> test_check("regutools")
== testthat results ===========================================================
[ OK: 110 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ]
Warning message:
call dbDisconnect() when finished working with a connection
>
> proc.time()
user system elapsed
118.98 4.70 130.81
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regutools.Rcheck/examples_i386/regutools-Ex.timings
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regutools.Rcheck/examples_x64/regutools-Ex.timings
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