Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-01-16 13:53:36 -0500 (Thu, 16 Jan 2020).
Package 1335/1818 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
qckitfastq 1.3.0 August Guang
| malbec2 | Linux (Ubuntu 18.04.3 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | ERROR | [ ERROR ] | skipped | skipped |
Package: qckitfastq |
Version: 1.3.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data qckitfastq |
StartedAt: 2020-01-16 00:35:49 -0500 (Thu, 16 Jan 2020) |
EndedAt: 2020-01-16 00:36:16 -0500 (Thu, 16 Jan 2020) |
EllapsedTime: 27.7 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data qckitfastq ### ############################################################################## ############################################################################## * checking for file ‘qckitfastq/DESCRIPTION’ ... OK * preparing ‘qckitfastq’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes ----------------------------------- * installing *source* package ‘qckitfastq’ ... ** using staged installation ** libs clang++ -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RSeqAn/include' -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RSeqAn/include' -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c calc_adapter_content.cpp -o calc_adapter_content.o In file included from calc_adapter_content.cpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/RSeqAn/include/seqan/find.h:44: In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/RSeqAn/include/seqan/modifier.h:48: In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/RSeqAn/include/seqan/parallel.h:94: /Library/Frameworks/R.framework/Versions/4.0/Resources/library/RSeqAn/include/seqan/parallel/enumerable_thread_local.h:66:10: error: 'shared_timed_mutex' is unavailable: introduced in macOS 10.12 std::shared_timed_mutex _mutex{}; // TODO(rrahn): Replace by shared_mutex when c++17 is available. ^ /usr/local/clang8/bin/../include/c++/v1/shared_mutex:206:58: note: 'shared_timed_mutex' has been explicitly marked unavailable here class _LIBCPP_TYPE_VIS _LIBCPP_AVAILABILITY_SHARED_MUTEX shared_timed_mutex ^ In file included from calc_adapter_content.cpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/RSeqAn/include/seqan/find.h:44: In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/RSeqAn/include/seqan/modifier.h:48: In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/RSeqAn/include/seqan/parallel.h:94: /Library/Frameworks/R.framework/Versions/4.0/Resources/library/RSeqAn/include/seqan/parallel/enumerable_thread_local.h:127:10: error: 'shared_timed_mutex' is unavailable: introduced in macOS 10.12 std::shared_timed_mutex _mutex{}; // TODO(rrahn): Replace by shared_mutex when c++17 is available. ^ /usr/local/clang8/bin/../include/c++/v1/shared_mutex:206:58: note: 'shared_timed_mutex' has been explicitly marked unavailable here class _LIBCPP_TYPE_VIS _LIBCPP_AVAILABILITY_SHARED_MUTEX shared_timed_mutex ^ 2 errors generated. make: *** [calc_adapter_content.o] Error 1 ERROR: compilation failed for package ‘qckitfastq’ * removing ‘/private/tmp/RtmpcvqT0b/Rinst3d004d5e117c/qckitfastq’ ----------------------------------- ERROR: package installation failed