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BUILD report for qckitfastq on celaya2

This page was generated on 2020-01-16 13:53:36 -0500 (Thu, 16 Jan 2020).

Package 1335/1818HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
qckitfastq 1.3.0
August Guang
Snapshot Date: 2020-01-15 16:46:30 -0500 (Wed, 15 Jan 2020)
URL: https://git.bioconductor.org/packages/qckitfastq
Branch: master
Last Commit: 4af3351
Last Changed Date: 2019-10-29 13:43:31 -0500 (Tue, 29 Oct 2019)
malbec2 Linux (Ubuntu 18.04.3 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK 
celaya2 OS X 10.11.6 El Capitan / x86_64  ERROR [ ERROR ] skipped  skipped 

Summary

Package: qckitfastq
Version: 1.3.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data qckitfastq
StartedAt: 2020-01-16 00:35:49 -0500 (Thu, 16 Jan 2020)
EndedAt: 2020-01-16 00:36:16 -0500 (Thu, 16 Jan 2020)
EllapsedTime: 27.7 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data qckitfastq
###
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* checking for file ‘qckitfastq/DESCRIPTION’ ... OK
* preparing ‘qckitfastq’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘qckitfastq’ ...
** using staged installation
** libs
clang++ -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RSeqAn/include' -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RSeqAn/include' -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c calc_adapter_content.cpp -o calc_adapter_content.o
In file included from calc_adapter_content.cpp:7:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/RSeqAn/include/seqan/find.h:44:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/RSeqAn/include/seqan/modifier.h:48:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/RSeqAn/include/seqan/parallel.h:94:
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RSeqAn/include/seqan/parallel/enumerable_thread_local.h:66:10: error: 'shared_timed_mutex' is unavailable: introduced in macOS 10.12
    std::shared_timed_mutex  _mutex{};        // TODO(rrahn): Replace by shared_mutex when c++17 is available.
         ^
/usr/local/clang8/bin/../include/c++/v1/shared_mutex:206:58: note: 'shared_timed_mutex' has been explicitly marked unavailable here
class _LIBCPP_TYPE_VIS _LIBCPP_AVAILABILITY_SHARED_MUTEX shared_timed_mutex
                                                         ^
In file included from calc_adapter_content.cpp:7:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/RSeqAn/include/seqan/find.h:44:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/RSeqAn/include/seqan/modifier.h:48:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/RSeqAn/include/seqan/parallel.h:94:
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RSeqAn/include/seqan/parallel/enumerable_thread_local.h:127:10: error: 'shared_timed_mutex' is unavailable: introduced in macOS 10.12
    std::shared_timed_mutex  _mutex{};        // TODO(rrahn): Replace by shared_mutex when c++17 is available.
         ^
/usr/local/clang8/bin/../include/c++/v1/shared_mutex:206:58: note: 'shared_timed_mutex' has been explicitly marked unavailable here
class _LIBCPP_TYPE_VIS _LIBCPP_AVAILABILITY_SHARED_MUTEX shared_timed_mutex
                                                         ^
2 errors generated.
make: *** [calc_adapter_content.o] Error 1
ERROR: compilation failed for package ‘qckitfastq’
* removing ‘/private/tmp/RtmpcvqT0b/Rinst3d004d5e117c/qckitfastq’
      -----------------------------------
ERROR: package installation failed