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INSTALL report for pulsedSilac on tokay2

This page was generated on 2020-10-17 11:57:30 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE pulsedSilac PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1377/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
pulsedSilac 1.2.0
Marc Pagès-Gallego
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/pulsedSilac
Branch: RELEASE_3_11
Last Commit: 1f5efa5
Last Changed Date: 2020-04-27 15:30:59 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: pulsedSilac
Version: 1.2.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/pulsedSilac_1.2.0.tar.gz && rm -rf pulsedSilac.buildbin-libdir && mkdir pulsedSilac.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pulsedSilac.buildbin-libdir pulsedSilac_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL pulsedSilac_1.2.0.zip && rm pulsedSilac_1.2.0.tar.gz pulsedSilac_1.2.0.zip
StartedAt: 2020-10-16 17:55:42 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 17:57:10 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 87.6 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/pulsedSilac_1.2.0.tar.gz && rm -rf pulsedSilac.buildbin-libdir && mkdir pulsedSilac.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pulsedSilac.buildbin-libdir pulsedSilac_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL pulsedSilac_1.2.0.zip && rm pulsedSilac_1.2.0.tar.gz pulsedSilac_1.2.0.zip
###
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100 1370k  100 1370k    0     0  18.5M      0 --:--:-- --:--:-- --:--:-- 20.5M

install for i386

* installing *source* package 'pulsedSilac' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
in method for 'addMisscleavedPeptides' with signature '"SilacProteinExperiment"': no definition for class "SilacProteinExperiment"
in method for 'addMisscleavedPeptides' with signature '"SilacPeptideExperiment"': no definition for class "SilacPeptideExperiment"
in method for 'addMisscleavedPeptides' with signature '"SilacProteomicsExperiment"': no definition for class "SilacProteomicsExperiment"
** help
*** installing help indices
  converting help for package 'pulsedSilac'
    finding HTML links ... done
    SilacPeptideExperiment-class            html  
    finding level-2 HTML links ... done

    SilacPeptideExperiment-constructor      html  
    SilacProteinExperiment-class            html  
    SilacProteinExperiment-constructor      html  
    SilacProteinPeptideExperiment-accessors
                                            html  
    SilacProteomicsExperiment-accessors     html  
    SilacProteomicsExperiment-class         html  
    SilacProteomicsExperiment-constructor   html  
    addMisscleavedPeptides                  html  
    barplotCounts                           html  
    barplotTimeCoverage                     html  
    buildLinkerDf                           html  
    calculateAIC                            html  
    calculateIsotopeFraction                html  
    calculateIsotopeRatio                   html  
    calculateOldIsotopePool                 html  
    compareAIC                              html  
    filterByMissingTimepoints               html  
    mefPE                                   html  
    merge                                   html  
    mergeModelsLists                        html  
    modelTurnover                           html  
    mostStable                              html  
    plotDistributionAssay                   html  
    plotDistributionModel                   html  
    plotIndividualModel                     html  
    recycleLightLysine                      html  
    scatterCompareAssays                    html  
    scatterCompareModels                    html  
    upsetTimeCoverage                       html  
    wormsPE                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'pulsedSilac' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'pulsedSilac' as pulsedSilac_1.2.0.zip
* DONE (pulsedSilac)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'pulsedSilac' successfully unpacked and MD5 sums checked