Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:55:25 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE proDA PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1355/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
proDA 1.2.0 Constantin Ahlmann-Eltze
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: proDA |
Version: 1.2.0 |
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:proDA.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings proDA_1.2.0.tar.gz |
StartedAt: 2020-10-17 04:16:14 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 04:21:01 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 286.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: proDA.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:proDA.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings proDA_1.2.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.11-bioc/meat/proDA.Rcheck’ * using R version 4.0.3 (2020-10-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘proDA/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘proDA’ version ‘1.2.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘proDA’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
proDA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL proDA ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘proDA’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (proDA)
proDA.Rcheck/tests/testthat.Rout
R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(proDA) > > test_check("proDA") ══ testthat results ═══════════════════════════════════════════════════════════ [ OK: 107 | SKIPPED: 1 | WARNINGS: 0 | FAILED: 0 ] > > proc.time() user system elapsed 142.055 0.267 142.338
proDA.Rcheck/proDA-Ex.timings
name | user | system | elapsed | |
abundances | 0.949 | 0.056 | 1.020 | |
as_replicate | 0 | 0 | 0 | |
cash-proDAFit-method | 0.792 | 0.020 | 0.812 | |
coefficient_variance_matrices | 1.175 | 0.000 | 1.175 | |
coefficients | 1.057 | 0.000 | 1.057 | |
convergence | 0.712 | 0.000 | 0.712 | |
dist_approx | 1.24 | 0.00 | 1.24 | |
dist_approx_impl | 1.661 | 0.000 | 1.661 | |
feature_parameters | 0.722 | 0.000 | 0.722 | |
generate_synthetic_data | 0.032 | 0.000 | 0.032 | |
hyper_parameters | 0.732 | 0.003 | 0.736 | |
invprobit | 0.005 | 0.000 | 0.005 | |
median_normalization | 0.003 | 0.000 | 0.004 | |
mply_dbl | 0.006 | 0.000 | 0.006 | |
pd_lm | 0.014 | 0.000 | 0.014 | |
pd_row_t_test | 1.895 | 0.004 | 1.899 | |
proDA | 2.459 | 0.008 | 2.467 | |
reference_level | 0.62 | 0.00 | 0.62 | |
result_names | 0.759 | 0.000 | 0.759 | |
test_diff | 3.007 | 0.003 | 3.011 | |