Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:59:14 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE ppiStats PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1339/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
ppiStats 1.54.0 Bioconductor Package Maintainer
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | [ OK ] | OK |
Package: ppiStats |
Version: 1.54.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ppiStats.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ppiStats_1.54.0.tar.gz |
StartedAt: 2020-10-17 04:03:44 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 04:07:09 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 204.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ppiStats.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ppiStats.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ppiStats_1.54.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/ppiStats.Rcheck’ * using R version 4.0.3 (2020-10-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ppiStats/DESCRIPTION’ ... OK * this is package ‘ppiStats’ version ‘1.54.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ppiStats’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Package listed in more than one of Depends, Imports, Suggests, Enhances: ‘lattice’ A package should be listed in only one of these fields. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Packages in Depends field not imported from: ‘ScISI’ ‘ppiData’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.11-bioc/meat/ppiStats.Rcheck/00check.log’ for details.
ppiStats.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL ppiStats ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘ppiStats’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading No methods found in package ‘Biobase’ for request: ‘listlen’ when loading ‘RpsiXML’ No methods found in package ‘annotate’ for requests: ‘pubmed’, ‘buildPubMedAbst’ when loading ‘RpsiXML’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location No methods found in package ‘Biobase’ for request: ‘listlen’ when loading ‘RpsiXML’ No methods found in package ‘annotate’ for requests: ‘pubmed’, ‘buildPubMedAbst’ when loading ‘RpsiXML’ ** testing if installed package can be loaded from final location No methods found in package ‘Biobase’ for request: ‘listlen’ when loading ‘RpsiXML’ No methods found in package ‘annotate’ for requests: ‘pubmed’, ‘buildPubMedAbst’ when loading ‘RpsiXML’ ** testing if installed package keeps a record of temporary installation path * DONE (ppiStats)
ppiStats.Rcheck/ppiStats-Ex.timings
name | user | system | elapsed | |
assessSymmetry | 2.949 | 0.416 | 3.481 | |
bpMatrix | 0.922 | 0.817 | 1.770 | |
calcInOutDegStats | 0.017 | 0.001 | 0.018 | |
createSummaryTables | 0.212 | 0.007 | 0.218 | |
degreeEstimates | 0.002 | 0.000 | 0.003 | |
estErrProbMethodOfMoments | 0.002 | 0.001 | 0.002 | |
estimateCCMErrorRates | 1.747 | 0.356 | 2.105 | |
estimatePPIErrorRates | 4.522 | 0.240 | 4.810 | |
genBPGraph | 0.335 | 0.031 | 0.366 | |
idProteinErrorType | 1.996 | 0.296 | 2.294 | |
idProteinType | 0.043 | 0.015 | 0.056 | |
inOutScatterCharts | 0.000 | 0.000 | 0.001 | |
nullDistDoublyTestedEdges | 0.388 | 0.035 | 0.425 | |
twPERM | 0.000 | 0.000 | 0.001 | |
viabilityCharts | 0.329 | 0.024 | 0.353 | |