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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/plw_1.48.0.tar.gz && rm -rf plw.buildbin-libdir && mkdir plw.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=plw.buildbin-libdir plw_1.48.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL plw_1.48.0.zip && rm plw_1.48.0.tar.gz plw_1.48.0.zip
###
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100  390k  100  390k    0     0  5442k      0 --:--:-- --:--:-- --:--:-- 6013k

install for i386

* installing *source* package 'plw' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c SpecialFunctions.c -o SpecialFunctions.o
SpecialFunctions.c: In function 'getPosteriorProbsAndSigmaHatStrata0':
SpecialFunctions.c:154:20: warning: variable 's2' set but not used [-Wunused-but-set-variable]
  double kk,C,s0,s1,s2,temp0,aa;
                    ^~
SpecialFunctions.c:154:17: warning: variable 's1' set but not used [-Wunused-but-set-variable]
  double kk,C,s0,s1,s2,temp0,aa;
                 ^~
SpecialFunctions.c:154:14: warning: variable 's0' set but not used [-Wunused-but-set-variable]
  double kk,C,s0,s1,s2,temp0,aa;
              ^~
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c SpecialOptim.c -o SpecialOptim.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o plw.dll tmp.def SpecialFunctions.o SpecialOptim.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/plw.buildbin-libdir/00LOCK-plw/00new/plw/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'plw'
    finding HTML links ... done
    AffySpikeU95Subset                      html  
    HowToPLW                                html  
    estimateMVbeta                          html  
    estimateSigma                           html  
    estimateSigmaMV                         html  
    estimateSigmaMVbeta                     html  
    getKnots                                html  
    lmw                                     html  
    logitT                                  html  
    plw-package                             html  
    plw                                     html  
    scaleParameterPlot                      html  
    statByIndex                             html  
    topRankSummary                          html  
    varHistPlot                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'plw' is deprecated and will be removed from Bioconductor
  version 3.12
** testing if installed package can be loaded from final location
Warning: Package 'plw' is deprecated and will be removed from Bioconductor
  version 3.12
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'plw' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c SpecialFunctions.c -o SpecialFunctions.o
SpecialFunctions.c: In function 'getPosteriorProbsAndSigmaHatStrata0':
SpecialFunctions.c:154:20: warning: variable 's2' set but not used [-Wunused-but-set-variable]
  double kk,C,s0,s1,s2,temp0,aa;
                    ^~
SpecialFunctions.c:154:17: warning: variable 's1' set but not used [-Wunused-but-set-variable]
  double kk,C,s0,s1,s2,temp0,aa;
                 ^~
SpecialFunctions.c:154:14: warning: variable 's0' set but not used [-Wunused-but-set-variable]
  double kk,C,s0,s1,s2,temp0,aa;
              ^~
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c SpecialOptim.c -o SpecialOptim.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o plw.dll tmp.def SpecialFunctions.o SpecialOptim.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/plw.buildbin-libdir/plw/libs/x64
** testing if installed package can be loaded
Warning: Package 'plw' is deprecated and will be removed from Bioconductor
  version 3.12
* MD5 sums
packaged installation of 'plw' as plw_1.48.0.zip
* DONE (plw)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'plw' successfully unpacked and MD5 sums checked