Gabriel Odom
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/pathwayPCA |
| Branch: RELEASE_3_11 |
| Last Commit: 4329426 |
| Last Changed Date: 2020-04-27 15:24:49 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:21 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE pathwayPCA PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1277/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| pathwayPCA 1.4.0 Gabriel Odom
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: pathwayPCA |
| Version: 1.4.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/pathwayPCA_1.4.0.tar.gz && rm -rf pathwayPCA.buildbin-libdir && mkdir pathwayPCA.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pathwayPCA.buildbin-libdir pathwayPCA_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL pathwayPCA_1.4.0.zip && rm pathwayPCA_1.4.0.tar.gz pathwayPCA_1.4.0.zip |
| StartedAt: 2020-10-16 17:03:19 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 17:04:04 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 44.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/pathwayPCA_1.4.0.tar.gz && rm -rf pathwayPCA.buildbin-libdir && mkdir pathwayPCA.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pathwayPCA.buildbin-libdir pathwayPCA_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL pathwayPCA_1.4.0.zip && rm pathwayPCA_1.4.0.tar.gz pathwayPCA_1.4.0.zip
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install for i386
* installing *source* package 'pathwayPCA' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'pathwayPCA'
finding HTML links ... done
AESPCA_pVals html
CheckAssay html
CheckPwyColl html
CheckSampleIDs html
Contains html
ControlFDR html
CreateOmics html
CreateOmicsPathway html
CreatePathwayCollection html
ExtractAESPCs html
GumbelMixpValues html
IntersectOmicsPwyCollct html
JoinPhenoAssay html
LoadOntoPCs html
OmicsCateg-class html
OmicsPathway-class html
OmicsReg-class html
OmicsSurv-class html
OptimGumbelMixParams html
PathwaytValues html
PermTestCateg html
PermTestReg html
PermTestSurv html
SE2Tidy html
SubsetPathwayCollection html
SubsetPathwayData html
SuperPCA_pVals html
TabulatepValues html
TransposeAssay html
ValidOmicsSurv html
WhichPathways html
aespca html
colonSurv_df html
colon_pathwayCollection html
coxTrain_fun html
getPathPCLs html
getPathpVals html
get_set_OmicsPathway html
get_set_OmicsRegCateg html
get_set_OmicsSurv html
glmTrain_fun html
lars.lsa html
mysvd html
normalize html
olsTrain_fun html
pathwayPCA-package html
pathway_tControl html
pathway_tScores html
permuteSamps html
print.pathwayCollection html
read_gmt html
show-OmicsPathway-method html
superpc.st html
superpc.train html
wikipwsHS_Entrez_pathwayCollection html
wikipwsHS_Symbol_pathwayCollection html
write_gmt html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'pathwayPCA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'pathwayPCA' as pathwayPCA_1.4.0.zip
* DONE (pathwayPCA)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'pathwayPCA' successfully unpacked and MD5 sums checked