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INSTALL report for openPrimeR on tokay2

This page was generated on 2020-10-17 11:57:19 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE openPrimeR PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1237/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
openPrimeR 1.10.4
Matthias Döring
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/openPrimeR
Branch: RELEASE_3_11
Last Commit: b79ca1e
Last Changed Date: 2020-08-14 03:49:12 -0400 (Fri, 14 Aug 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: openPrimeR
Version: 1.10.4
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/openPrimeR_1.10.4.tar.gz && rm -rf openPrimeR.buildbin-libdir && mkdir openPrimeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=openPrimeR.buildbin-libdir openPrimeR_1.10.4.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL openPrimeR_1.10.4.zip && rm openPrimeR_1.10.4.tar.gz openPrimeR_1.10.4.zip
StartedAt: 2020-10-16 18:07:48 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 18:09:54 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 125.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/openPrimeR_1.10.4.tar.gz && rm -rf openPrimeR.buildbin-libdir && mkdir openPrimeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=openPrimeR.buildbin-libdir openPrimeR_1.10.4.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL openPrimeR_1.10.4.zip && rm openPrimeR_1.10.4.tar.gz openPrimeR_1.10.4.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1772k  100 1772k    0     0  24.3M      0 --:--:-- --:--:-- --:--:-- 26.6M

install for i386

* installing *source* package 'openPrimeR' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'openPrimeR'
    finding HTML links ... done
    AnalysisStats                           html  
    Data                                    html  
    Input                                   html  
    Output                                  html  
    Plots                                   html  
    PrimerDesign                            html  
    PrimerEval                              html  
    Primers-method                          html  
    Scoring                                 html  
    Settings                                html  
    Templates-method                        html  
    TemplatesFunctions                      html  
    check_cvg_constraints                   html  
    create_report-Primers-Templates-method
                                            html  
    create_report-list-list-method          html  
    filterLimits-methods                    html  
    filters-methods                         html  
    get_cvg_stats-Primers-method            html  
    get_cvg_stats-list-method               html  
    openPrimeR-package                      html  
    plot_constraint-Primers-method          html  
    plot_constraint-list-method             html  
    plot_constraint_deviation-Primers-method
                                            html  
    plot_constraint_deviation-list-method   html  
    plot_constraint_fulfillment-Primers-method
                                            html  
    plot_constraint_fulfillment-list-method
                                            html  
    plot_cvg_constraints-Primers-method     html  
    plot_cvg_constraints-list-method        html  
    plot_primer_binding_regions-Primers-Templates-method
                                            html  
    plot_primer_binding_regions-list-list-method
                                            html  
    plot_primer_cvg-Primers-Templates-method
                                            html  
    plot_primer_cvg-list-list-method        html  
    plot_template_cvg-Primers-Templates-method
                                            html  
    plot_template_cvg-list-list-method      html  
    runTutorial                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Melting not available
ViennaRNA not available
OligoArrayAux not available
** testing if installed package can be loaded from final location
Melting not available
ViennaRNA not available
OligoArrayAux not available
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'openPrimeR' ...
** testing if installed package can be loaded
Melting not available
ViennaRNA not available
OligoArrayAux not available
* MD5 sums
packaged installation of 'openPrimeR' as openPrimeR_1.10.4.zip
* DONE (openPrimeR)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'openPrimeR' successfully unpacked and MD5 sums checked