Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:57:16 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE netReg PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1190/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
netReg 1.12.0 Simon Dirmeier
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ TIMEOUT ] | ERROR | skipped | skipped | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped |
Package: netReg |
Version: 1.12.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/netReg_1.12.0.tar.gz && rm -rf netReg.buildbin-libdir && mkdir netReg.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=netReg.buildbin-libdir netReg_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL netReg_1.12.0.zip && rm netReg_1.12.0.tar.gz netReg_1.12.0.zip |
StartedAt: 2020-10-16 17:05:43 -0400 (Fri, 16 Oct 2020) |
EndedAt: 2020-10-16 17:45:43 -0400 (Fri, 16 Oct 2020) |
EllapsedTime: 2400.3 seconds |
RetCode: None |
Status: TIMEOUT |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/netReg_1.12.0.tar.gz && rm -rf netReg.buildbin-libdir && mkdir netReg.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=netReg.buildbin-libdir netReg_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL netReg_1.12.0.zip && rm netReg_1.12.0.tar.gz netReg_1.12.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 864k 100 864k 0 0 12.9M 0 --:--:-- --:--:-- --:--:-- 14.5M install for i386 Warning in untar2(tarfile, files, list, exdir, restore_times) : failed to copy 'netReg/inst/NEWS' to 'netReg/NEWS.md' * installing *source* package 'netReg' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c graph_utility.cpp -o graph_utility.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c stat_functions.cpp -o stat_functions.o C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o netReg.dll tmp.def RcppExports.o graph_utility.o stat_functions.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/netReg.buildbin-libdir/00LOCK-netReg/00new/netReg/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'netReg' finding HTML links ... done cvedgenet-methods html edgenet-methods html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpagfugH/R.INSTALL1468305f374a/netReg/man/edgenet-methods.Rd:96: file link 'family' in package 'netReg' does not exist and so has been treated as a topic family-methods html grouplasso-methods html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpagfugH/R.INSTALL1468305f374a/netReg/man/grouplasso-methods.Rd:75: file link 'family' in package 'netReg' does not exist and so has been treated as a topic netReg-package html yeast html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location