Package: monocle

Version: 2.15.0

Command: rm -rf monocle.buildbin-libdir && mkdir monocle.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh monocle_2.15.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R monocle.buildbin-libdir

StartedAt: 2020-01-16 11:20:23 -0500 (Thu, 16 Jan 2020)

EndedAt: 2020-01-16 11:21:10 -0500 (Thu, 16 Jan 2020)

EllapsedTime: 47.2 seconds

RetCode: 0

Status:  OK

PackageFile: monocle_2.15.0.tgz

PackageFileSize: 1.421 MiB

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf monocle.buildbin-libdir && mkdir monocle.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh monocle_2.15.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R monocle.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=monocle.buildbin-libdir monocle_2.15.0.tar.gz'
>>>>>>> 

* installing *source* package ‘monocle’ ...
** using staged installation
** libs
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c clustering.cpp -o clustering.o
clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o monocle.so RcppExports.o clustering.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.11-bioc/meat/monocle.buildbin-libdir/00LOCK-monocle/00new/monocle/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (monocle)


>>>>>>> 
>>>>>>> FIXING LINKS FOR monocle.buildbin-libdir/monocle/libs//monocle.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "monocle.buildbin-libdir/monocle/libs//monocle.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.3.dylib" "monocle.buildbin-libdir/monocle/libs//monocle.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libreadline.5.2.dylib" "monocle.buildbin-libdir/monocle/libs//monocle.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libreadline.dylib" "monocle.buildbin-libdir/monocle/libs//monocle.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "monocle.buildbin-libdir/monocle/libs//monocle.so"