| Back to Multiple platform build/check report for BioC 3.11 | 
 | 
This page was generated on 2020-10-17 11:57:04 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE methylPipe PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. | 
| Package 1063/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| methylPipe 1.22.0 Kamal Kishore 
 | malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS |  | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] |  | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK |  | 
| Package: methylPipe | 
| Version: 1.22.0 | 
| Command: rm -rf methylPipe.buildbin-libdir && mkdir methylPipe.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methylPipe.buildbin-libdir methylPipe_1.22.0.tar.gz | 
| StartedAt: 2020-10-17 11:00:41 -0400 (Sat, 17 Oct 2020) | 
| EndedAt: 2020-10-17 11:02:18 -0400 (Sat, 17 Oct 2020) | 
| EllapsedTime: 96.9 seconds | 
| RetCode: 0 | 
| Status: OK | 
| PackageFile: methylPipe_1.22.0.zip | 
| PackageFileSize: 1.282 MiB | 
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### Running command:
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###   rm -rf methylPipe.buildbin-libdir && mkdir methylPipe.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methylPipe.buildbin-libdir methylPipe_1.22.0.tar.gz
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install for i386
* installing *source* package 'methylPipe' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c R_init_methylPipe.c -o R_init_methylPipe.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c binning.c -o binning.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o methylPipe.dll tmp.def R_init_methylPipe.o binning.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/methylPipe.buildbin-libdir/00LOCK-methylPipe/00new/methylPipe/libs/i386
** R
** exec
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'methylPipe'
    finding HTML links ... done
    BSdata-class                            html  
    finding level-2 HTML links ... done
    BSdataSet-class                         html  
    BSprepare                               html  
    GEcollection-class                      html  
    GElist-class                            html  
    chiCombP                                html  
    consolidateDMRs                         html  
    extractBinGRanges                       html  
    findDMR                                 html  
    findPMDs                                html  
    getCpos                                 html  
    getCposDensity                          html  
    mCsmoothing                             html  
    mapBSdata2GRanges                       html  
    meth.call                               html  
    methstats                               html  
    methylPipe-package                      html  
    plotMeth                                html  
    pool.reads                              html  
    process.hmc                             html  
    profileDNAmetBin                        html  
    splitChrs                               html  
    tabixdata2GR                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'methylPipe' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c R_init_methylPipe.c -o R_init_methylPipe.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c binning.c -o binning.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o methylPipe.dll tmp.def R_init_methylPipe.o binning.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/methylPipe.buildbin-libdir/methylPipe/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'methylPipe' as methylPipe_1.22.0.zip
* DONE (methylPipe)