##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/metahdep_1.46.0.tar.gz && rm -rf metahdep.buildbin-libdir && mkdir metahdep.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metahdep.buildbin-libdir metahdep_1.46.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL metahdep_1.46.0.zip && rm metahdep_1.46.0.tar.gz metahdep_1.46.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  234k  100  234k    0     0  3466k      0 --:--:-- --:--:-- --:--:-- 3842k

install for i386

* installing *source* package 'metahdep' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c metahdep.c -o metahdep.o
In file included from metahdep.c:3:
metahdep.c: In function 'get_row_indices2':
C:/Users/BIOCBU~1/BBS-3~1.11-/R/include/Rinternals.h:620:18: warning: passing argument 5 of 'metan_binary_search_unique' makes integer from pointer without a cast [-Wint-conversion]
 #define CHAR(x)  R_CHAR(x)
                  ^~~~~~~~~
metahdep.c:471:79: note: in expansion of macro 'CHAR'
     index = metan_binary_search_unique(name_list, sort_index, R_old_names, j, CHAR(STRING_ELT(R_old_chipsets, j)), i);
                                                                               ^~~~
metahdep.c:372:103: note: expected 'char' but argument is of type 'const char *'
 SEXP metan_binary_search_unique(SEXP name_list, SEXP sort_index, SEXP gene_name, int gene_index, char chipset_name, int study_num)
                                                                                                  ~~~~~^~~~~~~~~~~~
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o metahdep.dll tmp.def metahdep.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/metahdep.buildbin-libdir/00LOCK-metahdep/00new/metahdep/libs/i386
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'metahdep'
    finding HTML links ... done
    ES.obj-class                            html  
    HGU.DifExp.list                         html  
    HGU.newnames                            html  
    HGU.prep.list                           html  
    getPLM.es                               html  
    gloss                                   html  
    metahdep.FEMA                           html  
    metahdep.HBLM                           html  
    metahdep.REMA                           html  
    metahdep                                html  
    metahdep.format                         html  
    metahdep.other                          html  
    metaprep-class                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'metahdep' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c metahdep.c -o metahdep.o
In file included from metahdep.c:3:
metahdep.c: In function 'get_row_indices2':
C:/Users/BIOCBU~1/BBS-3~1.11-/R/include/Rinternals.h:620:18: warning: passing argument 5 of 'metan_binary_search_unique' makes integer from pointer without a cast [-Wint-conversion]
 #define CHAR(x)  R_CHAR(x)
                  ^~~~~~~~~
metahdep.c:471:79: note: in expansion of macro 'CHAR'
     index = metan_binary_search_unique(name_list, sort_index, R_old_names, j, CHAR(STRING_ELT(R_old_chipsets, j)), i);
                                                                               ^~~~
metahdep.c:372:103: note: expected 'char' but argument is of type 'const char *'
 SEXP metan_binary_search_unique(SEXP name_list, SEXP sort_index, SEXP gene_name, int gene_index, char chipset_name, int study_num)
                                                                                                  ~~~~~^~~~~~~~~~~~
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o metahdep.dll tmp.def metahdep.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/metahdep.buildbin-libdir/metahdep/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'metahdep' as metahdep_1.46.0.zip
* DONE (metahdep)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'metahdep' successfully unpacked and MD5 sums checked