Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:56:59 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE made4 PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 973/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
made4 1.62.0 Aedin Culhane
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | ERROR | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | ERROR | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | ERROR | OK |
Package: made4 |
Version: 1.62.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/made4_1.62.0.tar.gz && rm -rf made4.buildbin-libdir && mkdir made4.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=made4.buildbin-libdir made4_1.62.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL made4_1.62.0.zip && rm made4_1.62.0.tar.gz made4_1.62.0.zip |
StartedAt: 2020-10-16 18:10:47 -0400 (Fri, 16 Oct 2020) |
EndedAt: 2020-10-16 18:12:17 -0400 (Fri, 16 Oct 2020) |
EllapsedTime: 90.0 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/made4_1.62.0.tar.gz && rm -rf made4.buildbin-libdir && mkdir made4.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=made4.buildbin-libdir made4_1.62.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL made4_1.62.0.zip && rm made4_1.62.0.tar.gz made4_1.62.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 344k 100 344k 0 0 5364k 0 --:--:-- --:--:-- --:--:-- 5940k install for i386 * installing *source* package 'made4' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'made4' finding HTML links ... done NCI60 html array2ade4 html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/array2ade4.Rd:15: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/array2ade4.Rd:30: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic bet.coinertia html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/bet.coinertia.Rd:14: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/bet.coinertia.Rd:21: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic between.graph html bga html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/bga.Rd:16: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic bga.jackknife html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/bga.jackknife.Rd:37: file link 'plot.bga' in package 'made4' does not exist and so has been treated as a topic bga.suppl html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/bga.suppl.Rd:13: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/bga.suppl.Rd:19: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/bga.suppl.Rd:45: file link 'plot.bga' in package 'made4' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/bga.suppl.Rd:63: file link 'plot.bga' in package 'made4' does not exist and so has been treated as a topic checkfac html chime3D html cia html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/cia.Rd:14: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/cia.Rd:20: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic commonMap html comparelists html do3d html dudi.rwcoa html forrwcoa html genes html genes1d html getcol html getdata html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/getdata.Rd:14: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/getdata.Rd:25: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/getdata.Rd:29: missing file link 'vsn' graph1D html heatplot html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/heatplot.Rd:14: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic html3D html jmol3D html khan html ord html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/ord.Rd:13: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic overview html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/overview.Rd:10: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic plotarrays html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/plotarrays.Rd:45: file link 's.groups' in package 'made4' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/plotarrays.Rd:46: file link 's.match.col' in package 'made4' does not exist and so has been treated as a topic plotgenes html prettyDend html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/prettyDend.Rd:11: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic randomiser html s.var html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/s.var.Rd:65: file link 'plot.bga' in package 'made4' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/s.var.Rd:65: file link 'plot.cia' in package 'made4' does not exist and so has been treated as a topic sumstats html suppl html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/suppl.Rd:17: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/suppl.Rd:38: file link 'plot.bga' in package 'made4' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/suppl.Rd:47: file link 'plot.bga' in package 'made4' does not exist and so has been treated as a topic topgenes html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'made4' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'made4' as made4_1.62.0.zip * DONE (made4) * installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library' package 'made4' successfully unpacked and MD5 sums checked