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INSTALL report for ggcyto on tokay2

This page was generated on 2020-10-17 11:56:41 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE ggcyto PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 729/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ggcyto 1.16.0
Mike Jiang ,Jake Wagner
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/ggcyto
Branch: RELEASE_3_11
Last Commit: ee2d4d0
Last Changed Date: 2020-04-27 14:53:41 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: ggcyto
Version: 1.16.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/ggcyto_1.16.0.tar.gz && rm -rf ggcyto.buildbin-libdir && mkdir ggcyto.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ggcyto.buildbin-libdir ggcyto_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL ggcyto_1.16.0.zip && rm ggcyto_1.16.0.tar.gz ggcyto_1.16.0.zip
StartedAt: 2020-10-16 18:19:24 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 18:20:39 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 74.9 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/ggcyto_1.16.0.tar.gz && rm -rf ggcyto.buildbin-libdir && mkdir ggcyto.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ggcyto.buildbin-libdir ggcyto_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL ggcyto_1.16.0.zip && rm ggcyto_1.16.0.tar.gz ggcyto_1.16.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 13.7M  100 13.7M    0     0  58.6M      0 --:--:-- --:--:-- --:--:-- 60.3M

install for i386

* installing *source* package 'ggcyto' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ggcyto'
    finding HTML links ... done
    as.ggplot                               html  
    autoplot                                html  
    finding level-2 HTML links ... done

    axis_x_inverse_trans                    html  
    compute_stats                           html  
    flowCore_asinht_trans                   html  
    fortify.ellipsoidGate                   html  
    fortify.filterList                      html  
    fortify.flowSet                         html  
    fortify.polygonGate                     html  
    fortify.rectangleGate                   html  
    fortify_fs                              html  
    geom_gate                               html  
    geom_hvline                             html  
    geom_overlay                            html  
    geom_stats                              html  
    getFlowFrame                            html  
    ggcyto                                  html  
    ggcyto_add                              html  
    ggcyto_arrange                          html  
    ggcyto_par_default                      html  
    ggcyto_par_set                          html  
    is.ggcyto                               html  
    is.ggcyto_flowSet                       html  
    is.ggcyto_par                           html  
    labs_cyto                               html  
    marginalFilter                          html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWc0M05/R.INSTALL226c305088f/ggcyto/man/marginalFilter.Rd:14: file link 'boundaryFilter' in package 'flowCore' does not exist and so has been treated as a topic
    merge.quad.gates                        html  
    print.ggcyto                            html  
    print.ggcyto_GatingLayout               html  
    replace_data                            html  
    scale_x_flowCore_fasinh                 html  
    scale_x_logicle                         html  
    scales_flowjo_biexp                     html  
    scales_flowjo_fasinh                    html  
    stat_position                           html  
    transform-gate                          html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ggcyto' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ggcyto' as ggcyto_1.16.0.zip
* DONE (ggcyto)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'ggcyto' successfully unpacked and MD5 sums checked