Pierre Khoueiry
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/fcScan |
| Branch: RELEASE_3_11 |
| Last Commit: 726395e |
| Last Changed Date: 2020-04-27 15:29:15 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:33 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE fcScan PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 590/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| fcScan 1.2.0 Pierre Khoueiry
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: fcScan |
| Version: 1.2.0 |
| Command: C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:fcScan.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings fcScan_1.2.0.tar.gz |
| StartedAt: 2020-10-17 04:01:21 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 04:09:15 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 474.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: fcScan.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:fcScan.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings fcScan_1.2.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.11-bioc/meat/fcScan.Rcheck' * using R version 4.0.3 (2020-10-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'fcScan/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'fcScan' version '1.2.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'fcScan' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'runTests.R' OK ** running tests for arch 'x64' ... Running 'runTests.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
fcScan.Rcheck/00install.out
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/fcScan_1.2.0.tar.gz && rm -rf fcScan.buildbin-libdir && mkdir fcScan.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=fcScan.buildbin-libdir fcScan_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL fcScan_1.2.0.zip && rm fcScan_1.2.0.tar.gz fcScan_1.2.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 12129 100 12129 0 0 184k 0 --:--:-- --:--:-- --:--:-- 204k
install for i386
* installing *source* package 'fcScan' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'fcScan'
finding HTML links ... done
getCluster html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'fcScan' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'fcScan' as fcScan_1.2.0.zip
* DONE (fcScan)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'fcScan' successfully unpacked and MD5 sums checked
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fcScan.Rcheck/tests_i386/runTests.Rout
R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("fcScan")
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following object is masked from 'package:base':
expand.grid
Loading required package: IRanges
Attaching package: 'IRanges'
The following object is masked from 'package:grDevices':
windows
Loading required package: GenomeInfoDb
17 entries loaded
Time difference of 0.5000021 secs
Sites in condition do not match sites in data
3 entries loaded
Time difference of 0.09375095 secs
17 entries loaded
Time difference of 0.07812691 secs
17 entries loaded
Time difference of 0.078125 secs
17 entries loaded
No cluster found
17 entries loaded
Time difference of 0.09375191 secs
17 entries loaded
Time difference of 0.0781281 secs
17 entries loaded
Time difference of 0.171876 secs
17 entries loaded
Time difference of 0.1093771 secs
17 entries loaded
Time difference of 0.109374 secs
17 entries loaded
Time difference of 0.1093769 secs
6 entries loaded
Time difference of 0.1406229 secs
6 entries loaded
Time difference of 1.078131 secs
6 entries loaded
Time difference of 0.06250119 secs
6 entries loaded
Time difference of 0.0625 secs
10 entries loaded
Time difference of 0.07812691 secs
10 entries loaded
No cluster found
10 entries loaded
Time difference of 0.078125 secs
16 entries loaded
Time difference of 0.06250095 secs
6 entries loaded
Time difference of 0.0625 secs
6 entries loaded
Time difference of 0.06249905 secs
6 entries loaded
Time difference of 0.109376 secs
6 entries loaded
Time difference of 0.09375 secs
RUNIT TEST PROTOCOL -- Sat Oct 17 04:08:41 2020
***********************************************
Number of test functions: 1
Number of errors: 0
Number of failures: 0
1 Test Suite :
fcScan RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
15.17 1.57 20.12
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fcScan.Rcheck/tests_x64/runTests.Rout
R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("fcScan")
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following object is masked from 'package:base':
expand.grid
Loading required package: IRanges
Attaching package: 'IRanges'
The following object is masked from 'package:grDevices':
windows
Loading required package: GenomeInfoDb
17 entries loaded
Time difference of 0.3906281 secs
Sites in condition do not match sites in data
3 entries loaded
Time difference of 0.09375 secs
17 entries loaded
Time difference of 0.09375095 secs
17 entries loaded
Time difference of 0.1250041 secs
17 entries loaded
No cluster found
17 entries loaded
Time difference of 0.140624 secs
17 entries loaded
Time difference of 0.1093769 secs
17 entries loaded
Time difference of 0.2343771 secs
17 entries loaded
Time difference of 0.09374881 secs
17 entries loaded
Time difference of 0.09378195 secs
17 entries loaded
Time difference of 0.09375 secs
6 entries loaded
Time difference of 0.109375 secs
6 entries loaded
Time difference of 0.109375 secs
6 entries loaded
Time difference of 0.09375215 secs
6 entries loaded
Time difference of 0.0937531 secs
10 entries loaded
Time difference of 0.125 secs
10 entries loaded
No cluster found
10 entries loaded
Time difference of 0.09375119 secs
16 entries loaded
Time difference of 0.09375 secs
6 entries loaded
Time difference of 0.109376 secs
6 entries loaded
Time difference of 0.0937469 secs
6 entries loaded
Time difference of 0.09375095 secs
6 entries loaded
Time difference of 0.109376 secs
RUNIT TEST PROTOCOL -- Sat Oct 17 04:09:05 2020
***********************************************
Number of test functions: 1
Number of errors: 0
Number of failures: 0
1 Test Suite :
fcScan RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
19.32 0.54 23.57
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fcScan.Rcheck/examples_i386/fcScan-Ex.timings
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fcScan.Rcheck/examples_x64/fcScan-Ex.timings
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