| Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:56:33 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE exomeCopy PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 571/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| exomeCopy 1.34.0 Michael Love
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
| Package: exomeCopy |
| Version: 1.34.0 |
| Command: rm -rf exomeCopy.buildbin-libdir && mkdir exomeCopy.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=exomeCopy.buildbin-libdir exomeCopy_1.34.0.tar.gz |
| StartedAt: 2020-10-17 10:28:10 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 10:28:56 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 45.2 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: exomeCopy_1.34.0.zip |
| PackageFileSize: 738.7 KiB |
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### Running command:
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### rm -rf exomeCopy.buildbin-libdir && mkdir exomeCopy.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=exomeCopy.buildbin-libdir exomeCopy_1.34.0.tar.gz
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install for i386
* installing *source* package 'exomeCopy' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c exomeCopy.c -o exomeCopy.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o exomeCopy.dll tmp.def exomeCopy.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/exomeCopy.buildbin-libdir/00LOCK-exomeCopy/00new/exomeCopy/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'exomeCopy'
finding HTML links ... done
ExomeCopy-class html
compileCopyCountSegments html
copyCountSegments html
countBamInGRanges html
finding level-2 HTML links ... done
exomeCopy-package html
exomeCopy html
exomecounts html
generateBackground html
getGCcontent html
negLogLike html
plot.exomeCopyObject html
plotCompiledCNV html
subdivideGRanges html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'exomeCopy' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c exomeCopy.c -o exomeCopy.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o exomeCopy.dll tmp.def exomeCopy.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/exomeCopy.buildbin-libdir/exomeCopy/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'exomeCopy' as exomeCopy_1.34.0.zip
* DONE (exomeCopy)