Rafael A. Irizarry
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/bumphunter |
| Branch: RELEASE_3_11 |
| Last Commit: 4a6c1d8 |
| Last Changed Date: 2020-04-27 14:32:19 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:11 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE bumphunter PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 213/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| bumphunter 1.30.0 Rafael A. Irizarry
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: bumphunter |
| Version: 1.30.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/bumphunter_1.30.0.tar.gz && rm -rf bumphunter.buildbin-libdir && mkdir bumphunter.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bumphunter.buildbin-libdir bumphunter_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL bumphunter_1.30.0.zip && rm bumphunter_1.30.0.tar.gz bumphunter_1.30.0.zip |
| StartedAt: 2020-10-16 19:07:02 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 19:08:21 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 78.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/bumphunter_1.30.0.tar.gz && rm -rf bumphunter.buildbin-libdir && mkdir bumphunter.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bumphunter.buildbin-libdir bumphunter_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL bumphunter_1.30.0.zip && rm bumphunter_1.30.0.tar.gz bumphunter_1.30.0.zip
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install for i386
* installing *source* package 'bumphunter' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'bumphunter'
finding HTML links ... done
TT html
annotateNearest html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpyonycf/R.INSTALL2bb0e4261dd/bumphunter/man/annotateNearest.Rd:31: file link 'nearest' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpyonycf/R.INSTALL2bb0e4261dd/bumphunter/man/annotateNearest.Rd:34: file link 'nearest' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpyonycf/R.INSTALL2bb0e4261dd/bumphunter/man/annotateNearest.Rd:59: file link 'nearest' in package 'IRanges' does not exist and so has been treated as a topic
annotateTranscripts html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpyonycf/R.INSTALL2bb0e4261dd/bumphunter/man/annotateTranscripts.Rd:39: file link 'mapIds' in package 'AnnotationDbi' does not exist and so has been treated as a topic
bumphunter html
clusterMaker html
dummyData html
getSegments html
locfitByCluster html
loessByCluster html
matchGenes html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpyonycf/R.INSTALL2bb0e4261dd/bumphunter/man/matchGenes.Rd:41: file link 'nearest' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpyonycf/R.INSTALL2bb0e4261dd/bumphunter/man/matchGenes.Rd:55: file link 'nearest' in package 'IRanges' does not exist and so has been treated as a topic
regionFinder html
runmedByCluster html
smoother html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'bumphunter' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'bumphunter' as bumphunter_1.30.0.zip
* DONE (bumphunter)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'bumphunter' successfully unpacked and MD5 sums checked