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INSTALL report for artMS on tokay2

This page was generated on 2020-10-17 11:56:06 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE artMS PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 86/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
artMS 1.6.5
David Jimenez-Morales
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/artMS
Branch: RELEASE_3_11
Last Commit: ba1bbb1
Last Changed Date: 2020-05-21 13:44:10 -0400 (Thu, 21 May 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: artMS
Version: 1.6.5
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/artMS_1.6.5.tar.gz && rm -rf artMS.buildbin-libdir && mkdir artMS.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=artMS.buildbin-libdir artMS_1.6.5.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL artMS_1.6.5.zip && rm artMS_1.6.5.tar.gz artMS_1.6.5.zip
StartedAt: 2020-10-16 18:19:57 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 18:21:14 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 77.3 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/artMS_1.6.5.tar.gz && rm -rf artMS.buildbin-libdir && mkdir artMS.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=artMS.buildbin-libdir artMS_1.6.5.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL artMS_1.6.5.zip && rm artMS_1.6.5.tar.gz artMS_1.6.5.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 6828k  100 6828k    0     0  28.2M      0 --:--:-- --:--:-- --:--:-- 29.1M

install for i386

* installing *source* package 'artMS' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'artMS'
    finding HTML links ... done
    artmsAnalysisQuantifications            html  
    artmsAnnotateSpecie                     html  
    artmsAnnotationUniprot                  html  
    artmsAvgIntensityRT                     html  
    artmsChangeColumnName                   html  
    artmsConvertMetabolomics                html  
    artmsDataPlots                          html  
    artmsEnrichLog2fc                       html  
    artmsEnrichProfiler                     html  
    artmsEvidenceToSAINTq                   html  
    artmsEvidenceToSaintExpress             html  
    artmsFilterEvidenceContaminants         html  
    artmsGeneratePhSiteExtended             html  
    artmsIsEvidenceNewVersion               html  
    artmsIsSpeciesSupported                 html  
    artmsLeaveOnlyUniprotEntryID            html  
    artmsMapUniprot2Entrez                  html  
    artmsMergeEvidenceAndKeys               html  
    artmsMsstatsSummary                     html  
    artmsPhosfateOutput                     html  
    artmsPhotonOutput                       html  
    artmsPlotHeatmapQuant                   html  
    artmsProtein2SiteConversion             html  
    artmsQualityControlEvidenceBasic        html  
    artmsQualityControlEvidenceExtended     html  
    artmsQualityControlMetabolomics         html  
    artmsQualityControlSummaryExtended      html  
    artmsQuantification                     html  
    artmsResultsWide                        html  
    artmsSILACtoLong                        html  
    artmsSpectralCounts                     html  
    artmsVolcanoPlot                        html  
    artmsWriteConfigYamlFile                html  
    artms_config                            html  
    artms_data_corum_mito_database          html  
    artms_data_pathogen_LPN                 html  
    artms_data_pathogen_TB                  html  
    artms_data_ph_config                    html  
    artms_data_ph_contrast                  html  
    artms_data_ph_evidence                  html  
    artms_data_ph_keys                      html  
    artms_data_ph_msstats_modelqc           html  
    artms_data_ph_msstats_results           html  
    artms_data_randomDF                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'artMS' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'artMS' as artMS_1.6.5.zip
* DONE (artMS)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'artMS' successfully unpacked and MD5 sums checked