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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/Vega_1.36.0.tar.gz && rm -rf Vega.buildbin-libdir && mkdir Vega.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Vega.buildbin-libdir Vega_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL Vega_1.36.0.zip && rm Vega_1.36.0.tar.gz Vega_1.36.0.zip
###
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install for i386

* installing *source* package 'Vega' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c vega.c -o vega.o
vega.c: In function 'heap_delete':
vega.c:201:8: warning: variable 'deleted' set but not used [-Wunused-but-set-variable]
   node deleted;
        ^~~~~~~
vega.c: In function 'vega':
vega.c:355:13: warning: unused variable 'maxptr' [-Wunused-variable]
  node max, *maxptr, tmp_node;
             ^~~~~~
vega.c:348:68: warning: unused variable 'tmp_lambda2' [-Wunused-variable]
  double lambda, lambda_gradient, stop_lambda_gradient, tmp_lambda, tmp_lambda2;
                                                                    ^~~~~~~~~~~
vega.c:347:6: warning: unused variable 'index' [-Wunused-variable]
  int index;
      ^~~~~
vega.c: In function 'update_priority':
vega.c:560:64: warning: unused variable 'next_mean' [-Wunused-variable]
  double lambda, first_term, second_term, prev_mean, curr_mean, next_mean;
                                                                ^~~~~~~~~
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o Vega.dll tmp.def vega.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/Vega.buildbin-libdir/00LOCK-Vega/00new/Vega/libs/i386
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'Vega'
    finding HTML links ... done
    G519                                    html  
    Vega-package                            html  
    plotSegmentation                        html  
    vega                                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'Vega' is deprecated and will be removed from Bioconductor
  version 3.12
** testing if installed package can be loaded from final location
Warning: Package 'Vega' is deprecated and will be removed from Bioconductor
  version 3.12
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'Vega' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c vega.c -o vega.o
vega.c: In function 'heap_delete':
vega.c:201:8: warning: variable 'deleted' set but not used [-Wunused-but-set-variable]
   node deleted;
        ^~~~~~~
vega.c: In function 'vega':
vega.c:355:13: warning: unused variable 'maxptr' [-Wunused-variable]
  node max, *maxptr, tmp_node;
             ^~~~~~
vega.c:348:68: warning: unused variable 'tmp_lambda2' [-Wunused-variable]
  double lambda, lambda_gradient, stop_lambda_gradient, tmp_lambda, tmp_lambda2;
                                                                    ^~~~~~~~~~~
vega.c:347:6: warning: unused variable 'index' [-Wunused-variable]
  int index;
      ^~~~~
vega.c: In function 'update_priority':
vega.c:560:64: warning: unused variable 'next_mean' [-Wunused-variable]
  double lambda, first_term, second_term, prev_mean, curr_mean, next_mean;
                                                                ^~~~~~~~~
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o Vega.dll tmp.def vega.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/Vega.buildbin-libdir/Vega/libs/x64
** testing if installed package can be loaded
Warning: Package 'Vega' is deprecated and will be removed from Bioconductor
  version 3.12
* MD5 sums
packaged installation of 'Vega' as Vega_1.36.0.zip
* DONE (Vega)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'Vega' successfully unpacked and MD5 sums checked