Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:59:48 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE TransView PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1826/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
TransView 1.32.0 Julius Muller
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | NA | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | [ OK ] | OK | OK | OK |
Package: TransView |
Version: 1.32.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL TransView |
StartedAt: 2020-10-16 16:47:15 -0400 (Fri, 16 Oct 2020) |
EndedAt: 2020-10-16 16:47:46 -0400 (Fri, 16 Oct 2020) |
EllapsedTime: 31.2 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL TransView ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘TransView’ ... ** using staged installation ** libs clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rhtslib/include' -I/usr/local/include -fPIC -Wall -g -O2 -c R_init_TransView.c -o R_init_TransView.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rhtslib/include' -I/usr/local/include -fPIC -Wall -g -O2 -c bam_plbuf.c -o bam_plbuf.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rhtslib/include' -I/usr/local/include -fPIC -Wall -g -O2 -c bin_density.c -o bin_density.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rhtslib/include' -I/usr/local/include -fPIC -Wall -g -O2 -c construct_dc.c -o construct_dc.o In file included from construct_dc.c:23: In file included from ./parse_sam.h:4: In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rhtslib/include/sam.h:28: In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rhtslib/include/htslib/sam.h:31: In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rhtslib/include/htslib/hts.h:35: /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rhtslib/include/htslib/hts_log.h:72:1: warning: '__format__' attribute argument not supported: Rprintf [-Wignored-attributes] HTS_FORMAT(printf, 3, 4); ^ /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rhtslib/include/htslib/hts_defs.h:91:53: note: expanded from macro 'HTS_FORMAT' #define HTS_FORMAT(type, idx, first) __attribute__((__format__ (type, idx, first))) ^ 1 warning generated. clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rhtslib/include' -I/usr/local/include -fPIC -Wall -g -O2 -c parse_sam.c -o parse_sam.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rhtslib/include' -I/usr/local/include -fPIC -Wall -g -O2 -c sam.c -o sam.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rhtslib/include' -I/usr/local/include -fPIC -Wall -g -O2 -c slice_dc.c -o slice_dc.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rhtslib/include' -I/usr/local/include -fPIC -Wall -g -O2 -c visuals.c -o visuals.o clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o TransView.so R_init_TransView.o bam_plbuf.o bin_density.o construct_dc.o parse_sam.o sam.o slice_dc.o visuals.o /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rhtslib/usrlib/libhts.a -lcurl -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-TransView/00new/TransView/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TransView)