| Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:57:52 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE Starr PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1743/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| Starr 1.44.0 Benedikt Zacher
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | ERROR | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | ERROR | NA | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | ERROR | OK |
| Package: Starr |
| Version: 1.44.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/Starr_1.44.0.tar.gz && rm -rf Starr.buildbin-libdir && mkdir Starr.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Starr.buildbin-libdir Starr_1.44.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL Starr_1.44.0.zip && rm Starr_1.44.0.tar.gz Starr_1.44.0.zip |
| StartedAt: 2020-10-16 17:41:23 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 17:43:06 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 103.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/Starr_1.44.0.tar.gz && rm -rf Starr.buildbin-libdir && mkdir Starr.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Starr.buildbin-libdir Starr_1.44.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL Starr_1.44.0.zip && rm Starr_1.44.0.tar.gz Starr_1.44.0.zip
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install for i386
* installing *source* package 'Starr' ...
** using staged installation
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/biocbuild/bbs-3.11-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ahocorasick.c -o ahocorasick.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/biocbuild/bbs-3.11-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c collect.c -o collect.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/biocbuild/bbs-3.11-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c rm_small_peak.c -o rm_small_peak.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/biocbuild/bbs-3.11-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c sort_by_genomic.c -o sort_by_genomic.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o Starr.dll tmp.def ahocorasick.o collect.o rm_small_peak.o sort_by_genomic.o -LC:/Users/biocbuild/bbs-3.11-bioc/R/library/zlibbioc/libs/i386 -lzlib1bioc -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/Starr.buildbin-libdir/00LOCK-Starr/00new/Starr/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'Starr'
finding HTML links ... done
RGlist2ExpressionSet html
backgd.sd html
bpmapToProbeAnno html
cmarrt.ma html
cmarrt.peak html
correlate html
correlationPlot html
declare.bound html
densityscatter html
expressionByFeature html
fill html
fillNA html
filterGenes html
getFeatures html
getIntensites html
getMeans html
getProfiles html
getProfilesByBase html
getRatio html
heatmapplot html
intersection html
kde2dplot html
list2matrix html
ma.stat html
makeProbeAnno html
makeSplines html
mapFeatures html
match_ac html
normalize.Probes html
plot.Density html
plot.boxes html
plot.cmarrt html
plot.gcBias html
plot.image html
plot.ma html
plot.posBias html
plot.ratioScatter html
plot.scatter html
plotProfiles html
profileplot html
rankPercentile.normalize html
read.gffAnno html
readCelFile html
remap html
rm.small.peak html
sameLength html
singleclusterplot html
sort.by.genomic html
substract html
whichIn html
windowxy html
writeGFF html
writePosFile html
writeWIG html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'Starr' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/biocbuild/bbs-3.11-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ahocorasick.c -o ahocorasick.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/biocbuild/bbs-3.11-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c collect.c -o collect.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/biocbuild/bbs-3.11-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c rm_small_peak.c -o rm_small_peak.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/biocbuild/bbs-3.11-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c sort_by_genomic.c -o sort_by_genomic.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o Starr.dll tmp.def ahocorasick.o collect.o rm_small_peak.o sort_by_genomic.o -LC:/Users/biocbuild/bbs-3.11-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/Starr.buildbin-libdir/Starr/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Starr' as Starr_1.44.0.zip
* DONE (Starr)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'Starr' successfully unpacked and MD5 sums checked