RNAprobR 1.19.0
Nikos Sidiropoulos
| Snapshot Date: 2020-01-15 16:46:30 -0500 (Wed, 15 Jan 2020) |
| URL: https://git.bioconductor.org/packages/RNAprobR |
| Branch: master |
| Last Commit: 59d7da8 |
| Last Changed Date: 2019-10-29 13:39:06 -0500 (Tue, 29 Oct 2019) |
| malbec2 | Linux (Ubuntu 18.04.3 LTS) / x86_64 | OK | OK | WARNINGS | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | [ ERROR ] | skipped | skipped | |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RNAprobR
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* checking for file ‘RNAprobR/DESCRIPTION’ ... OK
* preparing ‘RNAprobR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘RNAprobR.Rnw’ using Sweave
Loading required package: GenomicFeatures
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
Loading required package: S4Vectors
Loading required package: stats4
Attaching package: ‘S4Vectors’
The following object is masked from ‘package:base’:
expand.grid
Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: GenomicRanges
Loading required package: AnnotationDbi
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: plyr
Attaching package: ‘plyr’
The following object is masked from ‘package:IRanges’:
desc
The following object is masked from ‘package:S4Vectors’:
rename
Reporting estimated unique counts according to HRF-Seq method
Reporting estimated unique counts according to HRF-Seq method
18.32 % of EUCs removed due to cutoff
9.46 % of EUCs removed due to cutoff
Warning in BED2txDb(bed_file) :
BED file do not contain splicing information. No splicing assumed.
Warning: transcript 16S_rRNA_E.coli discarded. Genomic location not provided.
Error: processing vignette 'RNAprobR.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'RNAprobR.tex' failed.
LaTeX errors:
! LaTeX Error: Command \counterwithout already defined.
Or name \end... illegal, see p.192 of the manual.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
! LaTeX Error: Command \counterwithin already defined.
Or name \end... illegal, see p.192 of the manual.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
--- failed re-building ‘RNAprobR.Rnw’
SUMMARY: processing the following file failed:
‘RNAprobR.Rnw’
Error: Vignette re-building failed.
Execution halted