Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-01-16 13:50:05 -0500 (Thu, 16 Jan 2020).
Package 1419/1818 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
RGMQL 1.7.0 Simone Pallotta
| malbec2 | Linux (Ubuntu 18.04.3 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | [ ERROR ] | skipped | skipped |
Package: RGMQL |
Version: 1.7.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RGMQL |
StartedAt: 2020-01-15 23:44:49 -0500 (Wed, 15 Jan 2020) |
EndedAt: 2020-01-15 23:45:55 -0500 (Wed, 15 Jan 2020) |
EllapsedTime: 65.7 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RGMQL ### ############################################################################## ############################################################################## * checking for file ‘RGMQL/DESCRIPTION’ ... OK * preparing ‘RGMQL’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘RGMQL-vignette.Rmd’ using rmarkdown Using Spark's default log4j profile: org/apache/spark/log4j-defaults.properties 20/01/15 23:45:52 INFO SparkContext: Running Spark version 2.2.0 20/01/15 23:45:53 WARN NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-java classes where applicable 20/01/15 23:45:53 INFO SparkContext: Submitted application: GMQL-R 20/01/15 23:45:53 INFO SecurityManager: Changing view acls to: biocbuild 20/01/15 23:45:53 INFO SecurityManager: Changing modify acls to: biocbuild 20/01/15 23:45:53 INFO SecurityManager: Changing view acls groups to: 20/01/15 23:45:53 INFO SecurityManager: Changing modify acls groups to: 20/01/15 23:45:53 INFO SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(biocbuild); groups with view permissions: Set(); users with modify permissions: Set(biocbuild); groups with modify permissions: Set() 20/01/15 23:45:54 WARN Utils: Service 'sparkDriver' could not bind on a random free port. You may check whether configuring an appropriate binding address. 20/01/15 23:45:54 WARN Utils: Service 'sparkDriver' could not bind on a random free port. You may check whether configuring an appropriate binding address. 20/01/15 23:45:54 WARN Utils: Service 'sparkDriver' could not bind on a random free port. You may check whether configuring an appropriate binding address. 20/01/15 23:45:54 WARN Utils: Service 'sparkDriver' could not bind on a random free port. You may check whether configuring an appropriate binding address. 20/01/15 23:45:54 WARN Utils: Service 'sparkDriver' could not bind on a random free port. You may check whether configuring an appropriate binding address. 20/01/15 23:45:54 WARN Utils: Service 'sparkDriver' could not bind on a random free port. You may check whether configuring an appropriate binding address. 20/01/15 23:45:54 WARN Utils: Service 'sparkDriver' could not bind on a random free port. You may check whether configuring an appropriate binding address. 20/01/15 23:45:54 WARN Utils: Service 'sparkDriver' could not bind on a random free port. You may check whether configuring an appropriate binding address. 20/01/15 23:45:54 WARN Utils: Service 'sparkDriver' could not bind on a random free port. You may check whether configuring an appropriate binding address. 20/01/15 23:45:54 WARN Utils: Service 'sparkDriver' could not bind on a random free port. You may check whether configuring an appropriate binding address. 20/01/15 23:45:54 WARN Utils: Service 'sparkDriver' could not bind on a random free port. You may check whether configuring an appropriate binding address. 20/01/15 23:45:54 WARN Utils: Service 'sparkDriver' could not bind on a random free port. You may check whether configuring an appropriate binding address. 20/01/15 23:45:54 WARN Utils: Service 'sparkDriver' could not bind on a random free port. You may check whether configuring an appropriate binding address. 20/01/15 23:45:54 WARN Utils: Service 'sparkDriver' could not bind on a random free port. You may check whether configuring an appropriate binding address. 20/01/15 23:45:54 WARN Utils: Service 'sparkDriver' could not bind on a random free port. You may check whether configuring an appropriate binding address. 20/01/15 23:45:54 WARN Utils: Service 'sparkDriver' could not bind on a random free port. You may check whether configuring an appropriate binding address. 20/01/15 23:45:54 ERROR SparkContext: Error initializing SparkContext. java.net.BindException: Can't assign requested address: Service 'sparkDriver' failed after 16 retries (on a random free port)! Consider explicitly setting the appropriate binding address for the service 'sparkDriver' (for example spark.driver.bindAddress for SparkDriver) to the correct binding address. at sun.nio.ch.Net.bind0(Native Method) at sun.nio.ch.Net.bind(Net.java:433) at sun.nio.ch.Net.bind(Net.java:425) at sun.nio.ch.ServerSocketChannelImpl.bind(ServerSocketChannelImpl.java:223) at io.netty.channel.socket.nio.NioServerSocketChannel.doBind(NioServerSocketChannel.java:127) at io.netty.channel.AbstractChannel$AbstractUnsafe.bind(AbstractChannel.java:501) at io.netty.channel.DefaultChannelPipeline$HeadContext.bind(DefaultChannelPipeline.java:1218) at io.netty.channel.AbstractChannelHandlerContext.invokeBind(AbstractChannelHandlerContext.java:496) at io.netty.channel.AbstractChannelHandlerContext.bind(AbstractChannelHandlerContext.java:481) at io.netty.channel.DefaultChannelPipeline.bind(DefaultChannelPipeline.java:965) at io.netty.channel.AbstractChannel.bind(AbstractChannel.java:210) at io.netty.bootstrap.AbstractBootstrap$2.run(AbstractBootstrap.java:353) at io.netty.util.concurrent.SingleThreadEventExecutor.runAllTasks(SingleThreadEventExecutor.java:399) at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:446) at io.netty.util.concurrent.SingleThreadEventExecutor$2.run(SingleThreadEventExecutor.java:131) at io.netty.util.concurrent.DefaultThreadFactory$DefaultRunnableDecorator.run(DefaultThreadFactory.java:144) at java.lang.Thread.run(Thread.java:748) 20/01/15 23:45:54 INFO SparkContext: Successfully stopped SparkContext Quitting from lines 237-238 (RGMQL-vignette.Rmd) Error: processing vignette 'RGMQL-vignette.Rmd' failed with diagnostics: java.net.BindException: Can't assign requested address: Service 'sparkDriver' failed after 16 retries (on a random free port)! Consider explicitly setting the appropriate binding address for the service 'sparkDriver' (for example spark.driver.bindAddress for SparkDriver) to the correct binding address. --- failed re-building ‘RGMQL-vignette.Rmd’ SUMMARY: processing the following file failed: ‘RGMQL-vignette.Rmd’ Error: Vignette re-building failed. Execution halted