Hans-Ulrich Klein
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/R453Plus1Toolbox |
| Branch: RELEASE_3_11 |
| Last Commit: 6bd5837 |
| Last Changed Date: 2020-04-27 14:23:29 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:32 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE R453Plus1Toolbox PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1408/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| R453Plus1Toolbox 1.38.0 Hans-Ulrich Klein
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: R453Plus1Toolbox |
| Version: 1.38.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/R453Plus1Toolbox_1.38.0.tar.gz && rm -rf R453Plus1Toolbox.buildbin-libdir && mkdir R453Plus1Toolbox.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=R453Plus1Toolbox.buildbin-libdir R453Plus1Toolbox_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL R453Plus1Toolbox_1.38.0.zip && rm R453Plus1Toolbox_1.38.0.tar.gz R453Plus1Toolbox_1.38.0.zip |
| StartedAt: 2020-10-16 19:14:40 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 19:17:58 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 197.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/R453Plus1Toolbox_1.38.0.tar.gz && rm -rf R453Plus1Toolbox.buildbin-libdir && mkdir R453Plus1Toolbox.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=R453Plus1Toolbox.buildbin-libdir R453Plus1Toolbox_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL R453Plus1Toolbox_1.38.0.zip && rm R453Plus1Toolbox_1.38.0.tar.gz R453Plus1Toolbox_1.38.0.zip
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install for i386
* installing *source* package 'R453Plus1Toolbox' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c readSFF.c -o readSFF.o
readSFF.c: In function 'readSFF':
readSFF.c:27:7: warning: variable 'block_count' set but not used [-Wunused-but-set-variable]
int block_count;
^~~~~~~~~~~
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c writeSFF.c -o writeSFF.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o R453Plus1Toolbox.dll tmp.def readSFF.o writeSFF.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/R453Plus1Toolbox.buildbin-libdir/00LOCK-R453Plus1Toolbox/00new/R453Plus1Toolbox/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'R453Plus1Toolbox'
finding HTML links ... done
AVASet-class html
finding level-2 HTML links ... done
AVASet html
AnnotatedVariants-class html
Breakpoints-class html
MapperSet-class html
MapperSet html
SFFContainer-class html
SFFRead-class html
alignShortReads html
annotateVariants html
assayDataAmp html
ava2vcf html
avaSetExample html
avaSetFiltered html
avaSetFiltered_annot html
baseFrequency html
baseQualityHist html
baseQualityStats html
breakpoints html
calculateTiTv html
captureArray html
complexity.dust html
complexity.entropy html
convertCigar html
coverageOnTarget html
demultiplexReads html
detectBreakpoints html
dinucleotideOddsRatio html
fDataAmp html
featureDataAmp html
filterChimericReads html
flowgramBarplot html
gcContent html
gcContentHist html
gcPerPosition html
genomeSequencerMIDs html
getAlignedReads html
getAminoAbbr html
getVariantPercentages html
homopolymerHist html
htmlReport html
mapperSetExample html
mergeBreakpoints html
mutationInfo html
nucleotideCharts html
plotAmpliconCoverage html
plotChimericReads html
plotVariants html
plotVariationFrequency html
positionQualityBoxplot html
qualityReportSFF html
readLengthHist html
readLengthStats html
readSFF html
readsOnTarget html
referenceSequences html
regions html
removeLinker html
sequenceCaptureLinkers html
sequenceQualityHist html
setVariantFilter html
sff2fastq html
variants html
writeSFF html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'R453Plus1Toolbox' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c readSFF.c -o readSFF.o
readSFF.c: In function 'readSFF':
readSFF.c:27:7: warning: variable 'block_count' set but not used [-Wunused-but-set-variable]
int block_count;
^~~~~~~~~~~
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c writeSFF.c -o writeSFF.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o R453Plus1Toolbox.dll tmp.def readSFF.o writeSFF.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/R453Plus1Toolbox.buildbin-libdir/R453Plus1Toolbox/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'R453Plus1Toolbox' as R453Plus1Toolbox_1.38.0.zip
* DONE (R453Plus1Toolbox)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'R453Plus1Toolbox' successfully unpacked and MD5 sums checked