| Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:59:19 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE QSutils PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1395/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| QSutils 1.6.0 Mercedes Guerrero-Murillo
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | [ OK ] | OK |
| Package: QSutils |
| Version: 1.6.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:QSutils.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings QSutils_1.6.0.tar.gz |
| StartedAt: 2020-10-17 04:16:16 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 04:18:10 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 113.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: QSutils.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:QSutils.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings QSutils_1.6.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/QSutils.Rcheck’ * using R version 4.0.3 (2020-10-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘QSutils/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘QSutils’ version ‘1.6.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘QSutils’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
QSutils.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL QSutils ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘QSutils’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (QSutils)
QSutils.Rcheck/QSutils-Ex.timings
| name | user | system | elapsed | |
| Collapse | 0.184 | 0.006 | 0.193 | |
| ConsSeq | 0.033 | 0.003 | 0.037 | |
| CorrectGapsAndNs | 0.008 | 0.001 | 0.011 | |
| DBrule | 0.072 | 0.011 | 0.085 | |
| DNA.dist | 0.013 | 0.002 | 0.015 | |
| DSFT | 0.006 | 0.001 | 0.006 | |
| Diverge | 0.003 | 0.000 | 0.003 | |
| DottedAlignment | 0.015 | 0.002 | 0.018 | |
| FAD | 0.007 | 0.001 | 0.009 | |
| FreqMat | 0.032 | 0.009 | 0.040 | |
| GenerateVars | 0.008 | 0.002 | 0.009 | |
| GenotypeStandards_A-H.fas | 0.011 | 0.002 | 0.013 | |
| GetInfProfile | 0.034 | 0.007 | 0.040 | |
| GetQSData | 0.728 | 0.062 | 0.790 | |
| GetRandomSeq | 0.000 | 0.000 | 0.001 | |
| GiniSimpson | 0.001 | 0.001 | 0.001 | |
| HCq | 0.008 | 0.002 | 0.010 | |
| Hill | 0.006 | 0.002 | 0.008 | |
| IntersectStrandHpls | 0.121 | 0.005 | 0.126 | |
| MutationFreq | 0.622 | 0.080 | 0.702 | |
| MutsTbl | 0.027 | 0.004 | 0.030 | |
| NucleotideDiversity | 0.008 | 0.001 | 0.008 | |
| PolyDist | 0.047 | 0.001 | 0.048 | |
| Rao | 0.023 | 0.002 | 0.025 | |
| ReadAmplSeqs | 0.032 | 0.002 | 0.034 | |
| Renyi | 0.004 | 0.001 | 0.004 | |
| ReportVariants | 0.029 | 0.002 | 0.031 | |
| SegSites | 0.014 | 0.001 | 0.016 | |
| Shannon | 0.001 | 0.001 | 0.002 | |
| SortByMutations | 0.601 | 0.044 | 0.645 | |
| SummaryMuts | 0.026 | 0.002 | 0.028 | |
| TotalMutations | 0.030 | 0.001 | 0.031 | |
| Toy.GapsAndNs.fna | 0.064 | 0.003 | 0.067 | |
| ToyData_10_50_1000.fna | 0.041 | 0.002 | 0.044 | |
| ToyData_FWReads.fna | 0.123 | 0.006 | 0.129 | |
| ToyData_RVReads.fna | 0.107 | 0.004 | 0.112 | |
| UniqueMutations | 0.018 | 0.001 | 0.019 | |
| Unknown-Genotype.fna | 0.018 | 0.002 | 0.020 | |
| fn.ab | 0.006 | 0.001 | 0.009 | |
| geom.series | 0.006 | 0.000 | 0.006 | |