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INSTALL report for PubScore on tokay2

This page was generated on 2020-10-17 11:57:30 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE PubScore PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1376/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PubScore 1.0.0
Tiago Lubiana
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/PubScore
Branch: RELEASE_3_11
Last Commit: 7ac3665
Last Changed Date: 2020-04-27 15:32:54 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: PubScore
Version: 1.0.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/PubScore_1.0.0.tar.gz && rm -rf PubScore.buildbin-libdir && mkdir PubScore.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PubScore.buildbin-libdir PubScore_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL PubScore_1.0.0.zip && rm PubScore_1.0.0.tar.gz PubScore_1.0.0.zip
StartedAt: 2020-10-16 17:47:12 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 17:48:06 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 54.0 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/PubScore_1.0.0.tar.gz && rm -rf PubScore.buildbin-libdir && mkdir PubScore.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PubScore.buildbin-libdir PubScore_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL PubScore_1.0.0.zip && rm PubScore_1.0.0.tar.gz PubScore_1.0.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 3059k  100 3059k    0     0  31.0M      0 --:--:-- --:--:-- --:--:-- 33.5M

install for i386

* installing *source* package 'PubScore' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'PubScore'
    finding HTML links ... done
    PubScore-class                          html  
    all_counts                              html  
    dot-getSimulation_test                  html  
    dot-query_pubmed                        html  
    gene2pubmed_db                          html  
    getScore                                html  
    get_all_counts                          html  
    get_literature_score                    html  
    heatmapViz                              html  
    hgcn_entrez_reference                   html  
    initialize-PubScore-method              html  
    networkViz                              html  
    plot_literature_graph                   html  
    plot_literature_score                   html  
    pubscore                                html  
    set_all_counts                          html  
    test_score                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'PubScore' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PubScore' as PubScore_1.0.0.zip
* DONE (PubScore)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'PubScore' successfully unpacked and MD5 sums checked