Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:55:23 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE Pi PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1310/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
Pi 2.0.3 Hai Fang
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: Pi |
Version: 2.0.3 |
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:Pi.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings Pi_2.0.3.tar.gz |
StartedAt: 2020-10-17 04:06:18 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 04:15:15 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 536.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: Pi.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:Pi.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings Pi_2.0.3.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.11-bioc/meat/Pi.Rcheck’ * using R version 4.0.3 (2020-10-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘Pi/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘Pi’ version ‘2.0.3’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘Pi’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
Pi.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL Pi ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘Pi’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'ROCR::plot' by 'graphics::plot' when loading 'Pi' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'ROCR::plot' by 'graphics::plot' when loading 'Pi' ** testing if installed package can be loaded from final location Warning: replacing previous import 'ROCR::plot' by 'graphics::plot' when loading 'Pi' ** testing if installed package keeps a record of temporary installation path * DONE (Pi)
Pi.Rcheck/Pi-Ex.timings
name | user | system | elapsed | |
EG | 0 | 0 | 0 | |
GS | 0.001 | 0.000 | 0.000 | |
aOnto | 0 | 0 | 0 | |
cTarget | 0 | 0 | 0 | |
dTarget | 0 | 0 | 0 | |
eGSEA | 0 | 0 | 0 | |
eTarget | 0 | 0 | 0 | |
eTerm | 0 | 0 | 0 | |
iSubg | 0 | 0 | 0 | |
ls_eTerm | 0 | 0 | 0 | |
pNode | 0 | 0 | 0 | |
pPerf | 0 | 0 | 0 | |
sGS | 0 | 0 | 0 | |
sTarget | 0 | 0 | 0 | |
xAggregate | 0 | 0 | 0 | |
xCheckParallel | 0 | 0 | 0 | |
xCircos | 0.000 | 0.000 | 0.001 | |
xColormap | 0.017 | 0.000 | 0.017 | |
xCombineNet | 0.001 | 0.000 | 0.001 | |
xContour | 0.053 | 0.004 | 0.056 | |
xCorrelation | 0.001 | 0.000 | 0.000 | |
xDAGanno | 0.001 | 0.000 | 0.001 | |
xDefineEQTL | 0 | 0 | 0 | |
xDefineHIC | 0 | 0 | 0 | |
xDefineNet | 0 | 0 | 0 | |
xDefineOntology | 0 | 0 | 0 | |
xEnrichForest | 0.001 | 0.000 | 0.000 | |
xEnrichViewer | 0.001 | 0.000 | 0.000 | |
xEnricher | 0.001 | 0.000 | 0.001 | |
xEnricherGenes | 0.000 | 0.000 | 0.001 | |
xGGnetwork | 0.001 | 0.000 | 0.001 | |
xGR | 0 | 0 | 0 | |
xGR2nGenes | 0 | 0 | 0 | |
xGR2xGeneScores | 0 | 0 | 0 | |
xGR2xGenes | 0.001 | 0.000 | 0.000 | |
xGRscores | 0.001 | 0.000 | 0.000 | |
xGRsort | 0.001 | 0.000 | 0.000 | |
xGSEAbarplot | 0.001 | 0.000 | 0.000 | |
xGSEAconciser | 0.001 | 0.000 | 0.000 | |
xGSEAdotplot | 0.001 | 0.000 | 0.000 | |
xGSsimulator | 0.001 | 0.000 | 0.000 | |
xGeneID2Symbol | 0.001 | 0.000 | 0.000 | |
xHeatmap | 0.001 | 0.000 | 0.001 | |
xLiftOver | 0.001 | 0.000 | 0.001 | |
xMEabf | 0.001 | 0.000 | 0.000 | |
xMLcaret | 0.001 | 0.000 | 0.000 | |
xMLcompare | 0.001 | 0.000 | 0.000 | |
xMLdensity | 0.001 | 0.000 | 0.000 | |
xMLdotplot | 0.001 | 0.000 | 0.000 | |
xMLfeatureplot | 0.001 | 0.000 | 0.000 | |
xMLglmnet | 0 | 0 | 0 | |
xMLparameters | 0 | 0 | 0 | |
xMLrandomforest | 0 | 0 | 0 | |
xMLrename | 0.001 | 0.000 | 0.000 | |
xMLzoom | 0.001 | 0.000 | 0.000 | |
xPieplot | 0 | 0 | 0 | |
xPier | 0.001 | 0.000 | 0.001 | |
xPierABF | 0 | 0 | 0 | |
xPierABFheatmap | 0 | 0 | 0 | |
xPierAnno | 0 | 0 | 0 | |
xPierCor | 0 | 0 | 0 | |
xPierCross | 0 | 0 | 0 | |
xPierEvidence | 0 | 0 | 0 | |
xPierGRs | 0 | 0 | 0 | |
xPierGSEA | 0.001 | 0.000 | 0.000 | |
xPierGenes | 0.001 | 0.000 | 0.000 | |
xPierMRS | 0.001 | 0.000 | 0.000 | |
xPierManhattan | 0.001 | 0.000 | 0.001 | |
xPierMatrix | 0.000 | 0.000 | 0.001 | |
xPierPathways | 0.000 | 0.000 | 0.001 | |
xPierROCR | 0 | 0 | 0 | |
xPierSNPs | 0 | 0 | 0 | |
xPierSNPsAdv | 0 | 0 | 0 | |
xPierSNPsAdvABF | 0 | 0 | 0 | |
xPierSubnet | 0.001 | 0.000 | 0.000 | |
xPierTrack | 0.001 | 0.000 | 0.000 | |
xPierTrackAdv | 0.000 | 0.000 | 0.001 | |
xPredictCompare | 0.000 | 0.000 | 0.001 | |
xPredictROCR | 0.000 | 0.000 | 0.001 | |
xRDataLoader | 0.000 | 0.000 | 0.001 | |
xRWR | 0.000 | 0.002 | 0.002 | |
xSM2DF | 0.020 | 0.004 | 0.024 | |
xSNP2cGenes | 0 | 0 | 0 | |
xSNP2eGenes | 0 | 0 | 0 | |
xSNP2nGenes | 0 | 0 | 0 | |
xSNPlocations | 0 | 0 | 0 | |
xSNPscores | 0 | 0 | 0 | |
xSparseMatrix | 0.021 | 0.004 | 0.024 | |
xSubneterGenes | 0.001 | 0.000 | 0.000 | |
xSymbol2GeneID | 0 | 0 | 0 | |
xVisEvidence | 0 | 0 | 0 | |
xVisEvidenceAdv | 0 | 0 | 0 | |
xVisKernels | 0.022 | 0.000 | 0.022 | |
xVisNet | 0.000 | 0.001 | 0.000 | |