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BUILD report for OUTRIDER on malbec2

This page was generated on 2020-10-17 11:55:19 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE OUTRIDER PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1253/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OUTRIDER 1.6.1
Christian Mertes
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/OUTRIDER
Branch: RELEASE_3_11
Last Commit: bef68ce
Last Changed Date: 2020-10-09 18:47:42 -0400 (Fri, 09 Oct 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK [ ERROR ] skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
machv2 macOS 10.14.6 Mojave / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: OUTRIDER
Version: 1.6.1
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data OUTRIDER
StartedAt: 2020-10-16 20:48:49 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 20:52:12 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 203.0 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data OUTRIDER
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* checking for file ‘OUTRIDER/DESCRIPTION’ ... OK
* preparing ‘OUTRIDER’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘OUTRIDER.Rnw’ using knitr
229 genes did not pass the filter due to zero counts. This is 22.9% of the genes.
Fri Oct 16 20:50:48 2020: SizeFactor estimation ...
Fri Oct 16 20:50:49 2020: Controlling for confounders ...
Using estimated q with: 23
Fri Oct 16 20:50:49 2020: Using the autoencoder implementation for controlling.
Fri Oct 16 20:52:08 2020: Used the autoencoder implementation for controlling.
Fri Oct 16 20:52:08 2020: P-value calculation ...
Fri Oct 16 20:52:09 2020: Zscore calculation ...
Warning in file(file, "rt") :
  cannot open URL 'https://media.nature.com/original/nature-assets/ncomms/2017/170612/ncomms15824/extref/ncomms15824-s1.txt': HTTP status was '502 Bad Gateway'
Quitting from lines 225-240 (OUTRIDER.Rnw) 
Error: processing vignette 'OUTRIDER.Rnw' failed with diagnostics:
cannot open the connection to 'http://media.nature.com/original/nature-assets/ncomms/2017/170612/ncomms15824/extref/ncomms15824-s1.txt'
--- failed re-building ‘OUTRIDER.Rnw’

SUMMARY: processing the following file failed:
  ‘OUTRIDER.Rnw’

Error: Vignette re-building failed.
Execution halted