Robert B Scharpf
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/MinimumDistance |
| Branch: RELEASE_3_11 |
| Last Commit: a9633d0 |
| Last Changed Date: 2020-04-27 14:29:35 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:06 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE MinimumDistance PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1086/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| MinimumDistance 1.32.0 Robert B Scharpf
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |
| Package: MinimumDistance |
| Version: 1.32.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/MinimumDistance_1.32.0.tar.gz && rm -rf MinimumDistance.buildbin-libdir && mkdir MinimumDistance.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MinimumDistance.buildbin-libdir MinimumDistance_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL MinimumDistance_1.32.0.zip && rm MinimumDistance_1.32.0.tar.gz MinimumDistance_1.32.0.zip |
| StartedAt: 2020-10-16 18:53:02 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 18:54:53 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 110.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/MinimumDistance_1.32.0.tar.gz && rm -rf MinimumDistance.buildbin-libdir && mkdir MinimumDistance.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MinimumDistance.buildbin-libdir MinimumDistance_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL MinimumDistance_1.32.0.zip && rm MinimumDistance_1.32.0.tar.gz MinimumDistance_1.32.0.zip
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install for i386
* installing *source* package 'MinimumDistance' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm'
Creating a new generic function for 'allNames' in package 'MinimumDistance'
in method for 'coerce' with signature '"RangedDataCNV","GRanges"': no definition for class "RangedDataCNV"
Creating a generic function for 'colMads' from package 'matrixStats' in package 'MinimumDistance'
in method for 'prune' with signature 'object="TrioSet",ranges="RangedDataCNV"': no definition for class "RangedDataCNV"
in method for 'prune' with signature 'object="TrioSetList",ranges="RangedDataCNV"': no definition for class "RangedDataCNV"
** help
*** installing help indices
converting help for package 'MinimumDistance'
finding HTML links ... done
DNAcopyParam html
Defunct html
Deprecated html
FilterParamMD-class html
FilterParamMD html
MAP html
MAP2 html
MDRanges-class html
MinDistExperiment-class html
MinDistExperiment html
MinDistGRanges-class html
MinDistGRanges html
MinDistParam-class html
MinDistParam html
MinDistPosterior-class html
MinimumDistance html
ParentOffspring-class html
ParentOffspringList-class html
Pedigree-class html
Pedigree html
PennParam html
TrioSet-class html
TrioSet html
TrioSetList-class html
TrioSetList html
TrioSetListLD html
acf2 html
calculateMindist html
coercion-methods html
denovo html
exampleTrioSetList html
filterExperiment html
mad2 html
mdLegend html
md_exp html
md_gr html
mindist html
nMAD html
pedigreeGrid html
pedigreeName html
pedigreeViewports html
plotDenovo html
range-ILimit-method html
segment2 html
finding level-2 HTML links ... done
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm'
** testing if installed package can be loaded from final location
No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'MinimumDistance' ...
** testing if installed package can be loaded
No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm'
* MD5 sums
packaged installation of 'MinimumDistance' as MinimumDistance_1.32.0.zip
* DONE (MinimumDistance)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'MinimumDistance' successfully unpacked and MD5 sums checked