Anne Biton
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/MineICA |
| Branch: RELEASE_3_11 |
| Last Commit: 234dd72 |
| Last Changed Date: 2020-04-27 14:33:06 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:06 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE MineICA PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1083/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| MineICA 1.28.0 Anne Biton
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |
| Package: MineICA |
| Version: 1.28.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/MineICA_1.28.0.tar.gz && rm -rf MineICA.buildbin-libdir && mkdir MineICA.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MineICA.buildbin-libdir MineICA_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL MineICA_1.28.0.zip && rm MineICA_1.28.0.tar.gz MineICA_1.28.0.zip |
| StartedAt: 2020-10-16 19:28:11 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 19:29:29 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 77.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/MineICA_1.28.0.tar.gz && rm -rf MineICA.buildbin-libdir && mkdir MineICA.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MineICA.buildbin-libdir MineICA_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL MineICA_1.28.0.zip && rm MineICA_1.28.0.tar.gz MineICA_1.28.0.zip
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install for i386
* installing *source* package 'MineICA' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'sampleNames<-' in package 'MineICA'
** help
*** installing help indices
converting help for package 'MineICA'
finding HTML links ... done
A html
Alist html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpmkFONq/R.INSTALL2e645f986cdf/MineICA/man/Alist.Rd:26: missing link 'class-IcaSet'
Slist html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpmkFONq/R.INSTALL2e645f986cdf/MineICA/man/Slist.Rd:28: missing link 'class-IcaSet'
addGenesToGoReport html
annot2Color html
annotCarbayo html
annotFeatures html
annotFeaturesComp html
annotFeaturesWithBiomaRt html
annotInGene html
annotReciprocal html
buildIcaSet html
buildMineICAParams html
build_sortHeatmap html
class-IcaSet html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpmkFONq/R.INSTALL2e645f986cdf/MineICA/man/class-IcaSet.Rd:321: missing link 'class-IcaSet'
class-MineICAParams html
clusVarAnalysis html
clusterFastICARuns html
clusterSamplesByComp html
clusterSamplesByComp_multiple html
compareAn html
compareAn2graphfile html
compareGenes html
cor2An html
correl2Comp html
dat html
dataCarbayo html
doEnrichment html
getComp html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpmkFONq/R.INSTALL2e645f986cdf/MineICA/man/getComp.Rd:33: missing link 'class-IcaSet'
getProj html
getSdExpr html
hgOver html
hypergeoAn html
icaSetCarbayo html
icaSetKim html
icaSetRiester html
icaSetStransky html
indComp html
mergeGostatsResults html
nbOccByGeneInComp html
nbOccInComp html
nbOccInComp_simple html
nodeAttrs html
plotAllMix html
plotCorGraph html
plotDens2classInComp_plotOnly html
plotDensAllAnnotInAllComp html
plotDensOneAnnotInAllComp html
plotMclust html
plotMix html
plotPosAnnotInComp html
plotPosOneAnnotInComp_ggplot html
plotPosOneAnnotLevInComp_ggplot html
plotPosSamplesInComp html
plot_heatmapsOnSel html
qualVarAnalysis html
quantVarAnalysis html
readA html
readS html
relativePath html
runAn html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpmkFONq/R.INSTALL2e645f986cdf/MineICA/man/runAn.Rd:71: missing file link 'class-GOHyperGParams'
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpmkFONq/R.INSTALL2e645f986cdf/MineICA/man/runAn.Rd:76: missing file link 'class-GOHyperGParams'
runCompareIcaSets html
runEnrich html
runICA html
selectContrib html
selectFeatures_IQR html
selectWitnessGenes html
wilcoxOrKruskalOnA html
writeGenes html
writeGostatsHtmltable html
writeHtmlResTestsByAnnot html
writeProjByComp html
writeRnkFiles html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'MineICA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MineICA' as MineICA_1.28.0.zip
* DONE (MineICA)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'MineICA' successfully unpacked and MD5 sums checked