MCRestimate 2.43.1
Marc Johannes
| Snapshot Date: 2020-01-15 16:46:30 -0500 (Wed, 15 Jan 2020) |
| URL: https://git.bioconductor.org/packages/MCRestimate |
| Branch: master |
| Last Commit: 258ca4f |
| Last Changed Date: 2020-01-06 11:36:38 -0500 (Mon, 06 Jan 2020) |
| malbec2 | Linux (Ubuntu 18.04.3 LTS) / x86_64 | OK | ERROR | skipped | | |
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | [ ERROR ] | skipped | skipped | |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MCRestimate
###
##############################################################################
##############################################################################
* checking for file ‘MCRestimate/DESCRIPTION’ ... OK
* preparing ‘MCRestimate’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘UsingMCRestimate.Rnw’ using Sweave
Loading required package: golubEsets
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Warning: Package 'MCRestimate' is deprecated and will be removed from
Bioconductor version 3.12
Attaching package: ‘MCRestimate’
The following object is masked from ‘package:base’:
identity
randomForest 4.6-14
Type rfNews() to see new features/changes/bug fixes.
Attaching package: ‘randomForest’
The following object is masked from ‘package:Biobase’:
combine
The following object is masked from ‘package:BiocGenerics’:
combine
Error: processing vignette 'UsingMCRestimate.Rnw' failed with diagnostics:
chunk 7 (label = RF.make)
Error in UseMethod("MCRestimate") :
no applicable method for 'MCRestimate' applied to an object of class "c('ExpressionSet', 'eSet', 'VersionedBiobase', 'Versioned')"
--- failed re-building ‘UsingMCRestimate.Rnw’
SUMMARY: processing the following file failed:
‘UsingMCRestimate.Rnw’
Error: Vignette re-building failed.
Execution halted