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### Running command:
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###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL LVSmiRNA
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* installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’
* installing *source* package ‘LVSmiRNA’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c basic_fns.c -o basic_fns.o
basic_fns.c: In function ‘lvs_median’:
basic_fns.c:146:7: warning: unused variable ‘i’ [-Wunused-variable]
   int i;
       ^
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c init.c -o init.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c lvs_rlm.c -o lvs_rlm.o
lvs_rlm.c: In function ‘gamma_fit’:
lvs_rlm.c:175:30: warning: variable ‘converged’ set but not used [-Wunused-but-set-variable]
   int i,j, rows, cols, iter, converged=0;
                              ^~~~~~~~~
lvs_rlm.c: In function ‘test_gamma_fit’:
lvs_rlm.c:286:30: warning: variable ‘converged’ set but not used [-Wunused-but-set-variable]
   int i,j, rows, cols, iter, converged=0;
                              ^~~~~~~~~
gcc -shared -L/home/biocbuild/bbs-3.11-bioc/R/lib -L/usr/local/lib -o LVSmiRNA.so basic_fns.o init.o lvs_rlm.o -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.11-bioc/R/lib -lRlapack -L/home/biocbuild/bbs-3.11-bioc/R/lib -lRblas -L/home/biocbuild/bbs-3.11-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.11-bioc/R/library/00LOCK-LVSmiRNA/00new/LVSmiRNA/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
No methods found in package ‘BiocGenerics’ for requests: ‘as.vector’, ‘unlist’ when loading ‘LVSmiRNA’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package ‘BiocGenerics’ for requests: ‘as.vector’, ‘unlist’ when loading ‘LVSmiRNA’
Warning: Package 'LVSmiRNA' is deprecated and will be removed from Bioconductor
  version 3.12
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
No methods found in package ‘BiocGenerics’ for requests: ‘as.vector’, ‘unlist’ when loading ‘LVSmiRNA’
Warning: Package 'LVSmiRNA' is deprecated and will be removed from Bioconductor
  version 3.12
** testing if installed package keeps a record of temporary installation path
* DONE (LVSmiRNA)