Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:58:41 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE HiCBricks PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 814/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
HiCBricks 1.6.0 Koustav Pal
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | [ OK ] | OK |
Package: HiCBricks |
Version: 1.6.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:HiCBricks.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings HiCBricks_1.6.0.tar.gz |
StartedAt: 2020-10-17 02:00:02 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 02:03:59 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 236.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HiCBricks.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:HiCBricks.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings HiCBricks_1.6.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/HiCBricks.Rcheck’ * using R version 4.0.3 (2020-10-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘HiCBricks/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HiCBricks’ version ‘1.6.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HiCBricks’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
HiCBricks.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL HiCBricks ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘HiCBricks’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HiCBricks)
HiCBricks.Rcheck/HiCBricks-Ex.timings
name | user | system | elapsed | |
BrickContainer_change_experiment_name | 1.398 | 0.101 | 1.502 | |
BrickContainer_change_output_directory | 1.208 | 0.073 | 1.282 | |
BrickContainer_get_path_to_file | 1.154 | 0.071 | 1.227 | |
BrickContainer_list_chromosomes | 1.048 | 0.070 | 1.119 | |
BrickContainer_list_experiment_name | 1.065 | 0.071 | 1.138 | |
BrickContainer_list_files | 1.112 | 0.071 | 1.186 | |
BrickContainer_list_output_directory | 1.114 | 0.074 | 1.189 | |
BrickContainer_list_resolutions | 1.058 | 0.070 | 1.128 | |
BrickContainer_unlink_resolution | 2.337 | 0.148 | 2.489 | |
Brick_add_ranges | 2.025 | 0.126 | 2.267 | |
Brick_call_compartments | 2.079 | 0.231 | 2.315 | |
Brick_export_to_sparse | 3.855 | 0.276 | 4.137 | |
Brick_fetch_range_index | 1.414 | 0.076 | 1.495 | |
Brick_fetch_row_vector | 2.587 | 0.194 | 2.787 | |
Brick_get_bintable | 1.118 | 0.079 | 1.240 | |
Brick_get_chrominfo | 1.053 | 0.065 | 1.161 | |
Brick_get_entire_matrix | 1.735 | 0.205 | 1.943 | |
Brick_get_matrix | 1.649 | 0.184 | 1.835 | |
Brick_get_matrix_mcols | 1.706 | 0.188 | 1.896 | |
Brick_get_matrix_within_coords | 2.389 | 0.181 | 2.677 | |
Brick_get_ranges | 1.112 | 0.077 | 1.190 | |
Brick_get_values_by_distance | 1.938 | 0.218 | 2.265 | |
Brick_get_vector_values | 1.600 | 0.173 | 1.778 | |
Brick_list_matrices | 1.066 | 0.069 | 1.137 | |
Brick_list_matrix_mcols | 1.001 | 0.064 | 1.124 | |
Brick_list_mcool_normalisations | 0.001 | 0.000 | 0.001 | |
Brick_list_mcool_resolutions | 0.000 | 0.001 | 0.001 | |
Brick_list_rangekeys | 1.005 | 0.065 | 1.112 | |
Brick_list_ranges_mcols | 1.066 | 0.070 | 1.137 | |
Brick_load_cis_matrix_till_distance | 1.443 | 0.156 | 1.601 | |
Brick_load_data_from_mcool | 0.001 | 0.001 | 0.001 | |
Brick_load_data_from_sparse | 0.001 | 0.001 | 0.001 | |
Brick_load_matrix | 1.583 | 0.175 | 1.762 | |
Brick_local_score_differentiator | 2.705 | 0.247 | 3.039 | |
Brick_make_ranges | 0.015 | 0.001 | 0.016 | |
Brick_matrix_dimensions | 1.586 | 0.176 | 1.766 | |
Brick_matrix_exists | 1.645 | 0.184 | 1.873 | |
Brick_matrix_filename | 1.616 | 0.178 | 1.798 | |
Brick_matrix_isdone | 1.665 | 0.183 | 1.850 | |
Brick_matrix_issparse | 1.693 | 0.185 | 1.880 | |
Brick_matrix_maxdist | 1.707 | 0.180 | 1.889 | |
Brick_matrix_minmax | 1.684 | 0.180 | 1.866 | |
Brick_mcool_normalisation_exists | 0 | 0 | 0 | |
Brick_rangekey_exists | 1.133 | 0.075 | 1.209 | |
Brick_return_region_position | 1.296 | 0.070 | 1.366 | |
Brick_vizart_plot_heatmap | 3.178 | 0.254 | 3.472 | |
Create_many_Bricks | 1.009 | 0.073 | 1.084 | |
Create_many_Bricks_from_mcool | 0.000 | 0.000 | 0.001 | |
load_BrickContainer | 1.069 | 0.062 | 1.133 | |