Koustav Pal
| Snapshot Date: 2020-01-15 16:46:30 -0500 (Wed, 15 Jan 2020) |
| URL: https://git.bioconductor.org/packages/HiCBricks |
| Branch: master |
| Last Commit: 6296425 |
| Last Changed Date: 2019-10-29 13:43:21 -0500 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-01-16 13:52:37 -0500 (Thu, 16 Jan 2020).
| Package 781/1818 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| HiCBricks 1.5.0 Koustav Pal
| malbec2 | Linux (Ubuntu 18.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | |
| Package: HiCBricks |
| Version: 1.5.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:HiCBricks.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings HiCBricks_1.5.0.tar.gz |
| StartedAt: 2020-01-16 05:22:15 -0500 (Thu, 16 Jan 2020) |
| EndedAt: 2020-01-16 05:27:05 -0500 (Thu, 16 Jan 2020) |
| EllapsedTime: 290.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HiCBricks.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:HiCBricks.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings HiCBricks_1.5.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/HiCBricks.Rcheck’
* using R Under development (unstable) (2019-12-14 r77572)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HiCBricks/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HiCBricks’ version ‘1.5.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HiCBricks’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
Brick_export_to_sparse 5.761 0.374 6.449
Brick_vizart_plot_heatmap 4.353 0.294 5.151
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
HiCBricks.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL HiCBricks ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘HiCBricks’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HiCBricks)
HiCBricks.Rcheck/HiCBricks-Ex.timings
| name | user | system | elapsed | |
| BrickContainer_change_experiment_name | 1.732 | 0.105 | 1.900 | |
| BrickContainer_change_output_directory | 1.626 | 0.077 | 1.705 | |
| BrickContainer_get_path_to_file | 1.454 | 0.064 | 1.523 | |
| BrickContainer_list_chromosomes | 1.475 | 0.066 | 1.548 | |
| BrickContainer_list_experiment_name | 1.446 | 0.083 | 1.590 | |
| BrickContainer_list_files | 1.499 | 0.081 | 1.816 | |
| BrickContainer_list_output_directory | 1.368 | 0.068 | 1.515 | |
| BrickContainer_list_resolutions | 1.420 | 0.068 | 1.488 | |
| BrickContainer_unlink_resolution | 2.983 | 0.131 | 3.207 | |
| Brick_add_ranges | 2.835 | 0.115 | 3.096 | |
| Brick_call_compartments | 2.790 | 0.317 | 3.296 | |
| Brick_export_to_sparse | 5.761 | 0.374 | 6.449 | |
| Brick_fetch_range_index | 1.841 | 0.075 | 2.017 | |
| Brick_fetch_row_vector | 2.933 | 0.218 | 3.340 | |
| Brick_get_bintable | 1.535 | 0.094 | 1.708 | |
| Brick_get_chrominfo | 1.431 | 0.065 | 1.600 | |
| Brick_get_entire_matrix | 2.775 | 0.809 | 3.764 | |
| Brick_get_matrix | 2.261 | 0.223 | 2.623 | |
| Brick_get_matrix_mcols | 2.276 | 0.243 | 2.716 | |
| Brick_get_matrix_within_coords | 3.364 | 0.237 | 3.805 | |
| Brick_get_ranges | 1.538 | 0.083 | 1.705 | |
| Brick_get_values_by_distance | 2.710 | 0.326 | 3.326 | |
| Brick_get_vector_values | 2.327 | 0.217 | 2.714 | |
| Brick_list_matrices | 1.503 | 0.102 | 1.704 | |
| Brick_list_matrix_mcols | 1.424 | 0.062 | 1.573 | |
| Brick_list_mcool_normalisations | 0.001 | 0.000 | 0.001 | |
| Brick_list_mcool_resolutions | 0.000 | 0.000 | 0.001 | |
| Brick_list_rangekeys | 1.439 | 0.066 | 1.526 | |
| Brick_list_ranges_mcols | 1.449 | 0.065 | 1.568 | |
| Brick_load_cis_matrix_till_distance | 2.043 | 0.182 | 2.350 | |
| Brick_load_data_from_mcool | 0.000 | 0.001 | 0.001 | |
| Brick_load_matrix | 2.156 | 0.202 | 2.487 | |
| Brick_local_score_differentiator | 3.676 | 0.365 | 4.241 | |
| Brick_make_ranges | 0.019 | 0.000 | 0.022 | |
| Brick_matrix_dimensions | 2.125 | 0.213 | 2.506 | |
| Brick_matrix_exists | 2.202 | 0.222 | 2.537 | |
| Brick_matrix_filename | 2.169 | 0.210 | 2.492 | |
| Brick_matrix_isdone | 2.213 | 0.216 | 2.497 | |
| Brick_matrix_issparse | 2.180 | 0.203 | 2.524 | |
| Brick_matrix_maxdist | 1.962 | 0.309 | 2.279 | |
| Brick_matrix_minmax | 1.940 | 0.259 | 2.209 | |
| Brick_mcool_normalisation_exists | 0.001 | 0.001 | 0.001 | |
| Brick_rangekey_exists | 1.448 | 0.079 | 1.669 | |
| Brick_return_region_position | 1.634 | 0.070 | 1.864 | |
| Brick_vizart_plot_heatmap | 4.353 | 0.294 | 5.151 | |
| Create_many_Bricks | 1.478 | 0.080 | 1.713 | |
| Create_many_Bricks_from_mcool | 0.000 | 0.001 | 0.000 | |
| load_BrickContainer | 1.616 | 0.071 | 1.836 | |